JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
STEAP4_chr7_88265892_88311894	0/0	t0038	8612	1	1	0	0	0	0	copy fasta	STEAP4	chr7	88265892	88311894
STEAP4_chr7_88265892_88311894	0/0	t0039	8618	1	0	0	0	0	1	copy fasta	STEAP4	chr7	88265892	88311894
STEAP4_chr7_88265892_88311894	0/0	t0040	8614	1	1	0	0	0	0	copy fasta	STEAP4	chr7	88265892	88311894
STEAP4_chr7_88265892_88311894	0/0	t0041	8612	1	1	0	0	0	0	copy fasta	STEAP4	chr7	88265892	88311894
STEAP4_chr7_88265892_88311894	0/0	t0042	8612	1	0	0	1	0	0	copy fasta	STEAP4	chr7	88265892	88311894
STEAP4_chr7_88265892_88311894	1/0	t0043	8612	1	0	0	0	0	0	copy fasta	STEAP4	chr7	88265892	88311894
STEAP4_chr7_88265892_88311894	0/0	t0044	8612	1	0	1	0	0	0	copy fasta	STEAP4	chr7	88265892	88311894
STEAP4_chr7_88265892_88311894	0/0	t0045	8612	1	1	0	0	0	0	copy fasta	STEAP4	chr7	88265892	88311894
STEAP4_chr7_88265892_88311894	0/0	t0046	8612	1	0	1	0	0	0	copy fasta	STEAP4	chr7	88265892	88311894
STEAP4_chr7_88265892_88311894	0/0	t0047	8612	1	1	0	0	0	0	copy fasta	STEAP4	chr7	88265892	88311894
STEAP4_chr7_88265892_88311894	0/0	t0048	8614	1	0	0	1	0	0	copy fasta	STEAP4	chr7	88265892	88311894
STEAP4_chr7_88265892_88311894	0/0	t0049	8612	1	0	1	0	0	0	copy fasta	STEAP4	chr7	88265892	88311894
STEAP4_chr7_88265892_88311894	0/0	t0050	8616	1	0	0	1	0	0	copy fasta	STEAP4	chr7	88265892	88311894
STEAP4_chr7_88265892_88311894	0/0	t0051	8612	1	0	0	1	0	0	copy fasta	STEAP4	chr7	88265892	88311894
STEAP4_chr7_88265892_88311894	0/0	t0052	8616	1	0	0	1	0	0	copy fasta	STEAP4	chr7	88265892	88311894
STEAP4_chr7_88265892_88311894	0/0	t0053	8612	1	0	0	0	0	1	copy fasta	STEAP4	chr7	88265892	88311894
STEAP4_chr7_88265892_88311894	0/0	t0054	8612	1	0	0	1	0	0	copy fasta	STEAP4	chr7	88265892	88311894
STEAP4_chr7_88265892_88311894	0/0	t0055	8612	1	0	0	1	0	0	copy fasta	STEAP4	chr7	88265892	88311894
STEAP4_chr7_88265892_88311894	0/0	t0056	8624	1	1	0	0	0	0	copy fasta	STEAP4	chr7	88265892	88311894
STEAP4_chr7_88265892_88311894	0/0	t0057	8612	1	0	1	0	0	0	copy fasta	STEAP4	chr7	88265892	88311894
STEAP4_chr7_88265892_88311894	0/0	t0058	8616	1	0	1	0	0	0	copy fasta	STEAP4	chr7	88265892	88311894
STEAP4_chr7_88265892_88311894	0/0	t0059	8614	1	1	0	0	0	0	copy fasta	STEAP4	chr7	88265892	88311894
STEAP4_chr7_88265892_88311894	0/0	t0060	8612	1	0	0	0	0	1	copy fasta	STEAP4	chr7	88265892	88311894
STEEP1_chrX_119533149_119570409	0/1	t0001	1626	133	17	22	77	5	11	copy fasta	STEEP1	chrX	119533149	119570409
STEEP1_chrX_119533149_119570409	0/0	t0002	1633	48	0	11	30	1	6	copy fasta	STEEP1	chrX	119533149	119570409
STEEP1_chrX_119533149_119570409	0/0	t0003	1633	25	21	1	0	0	3	copy fasta	STEEP1	chrX	119533149	119570409
STEEP1_chrX_119533149_119570409	0/0	t0004	1632	16	15	1	0	0	0	copy fasta	STEEP1	chrX	119533149	119570409
STEEP1_chrX_119533149_119570409	0/0	t0005	1627	12	3	3	6	0	0	copy fasta	STEEP1	chrX	119533149	119570409
STEEP1_chrX_119533149_119570409	0/0	t0006	1634	11	4	3	0	0	4	copy fasta	STEEP1	chrX	119533149	119570409
STEEP1_chrX_119533149_119570409	1/0	t0007	1633	11	0	4	0	5	1	copy fasta	STEEP1	chrX	119533149	119570409
STEEP1_chrX_119533149_119570409	0/0	t0008	1632	7	4	3	0	0	0	copy fasta	STEEP1	chrX	119533149	119570409
STEEP1_chrX_119533149_119570409	0/0	t0009	1632	3	0	0	2	0	1	copy fasta	STEEP1	chrX	119533149	119570409
STEEP1_chrX_119533149_119570409	0/0	t0010	1632	3	2	1	0	0	0	copy fasta	STEEP1	chrX	119533149	119570409
STEEP1_chrX_119533149_119570409	0/0	t0011	1634	3	0	1	1	0	1	copy fasta	STEEP1	chrX	119533149	119570409
STEEP1_chrX_119533149_119570409	0/0	t0012	1633	2	2	0	0	0	0	copy fasta	STEEP1	chrX	119533149	119570409
STEEP1_chrX_119533149_119570409	0/0	t0013	1626	2	0	0	0	0	2	copy fasta	STEEP1	chrX	119533149	119570409
STEEP1_chrX_119533149_119570409	0/0	t0014	1627	2	0	0	2	0	0	copy fasta	STEEP1	chrX	119533149	119570409
STEEP1_chrX_119533149_119570409	0/0	t0015	1633	1	0	0	0	0	1	copy fasta	STEEP1	chrX	119533149	119570409
STEEP1_chrX_119533149_119570409	0/0	t0016	1626	1	0	0	1	0	0	copy fasta	STEEP1	chrX	119533149	119570409
STEEP1_chrX_119533149_119570409	0/0	t0017	1633	1	1	0	0	0	0	copy fasta	STEEP1	chrX	119533149	119570409
STEEP1_chrX_119533149_119570409	0/0	t0018	1635	1	1	0	0	0	0	copy fasta	STEEP1	chrX	119533149	119570409
STEEP1_chrX_119533149_119570409	0/0	t0019	1634	1	1	0	0	0	0	copy fasta	STEEP1	chrX	119533149	119570409
STEEP1_chrX_119533149_119570409	0/0	t0020	1633	1	1	0	0	0	0	copy fasta	STEEP1	chrX	119533149	119570409
STEEP1_chrX_119533149_119570409	0/0	t0021	1633	1	1	0	0	0	0	copy fasta	STEEP1	chrX	119533149	119570409
STEEP1_chrX_119533149_119570409	0/0	t0022	1632	1	0	0	1	0	0	copy fasta	STEEP1	chrX	119533149	119570409
STEEP1_chrX_119533149_119570409	0/0	t0023	1634	1	1	0	0	0	0	copy fasta	STEEP1	chrX	119533149	119570409
STEEP1_chrX_119533149_119570409	0/0	t0024	1634	1	1	0	0	0	0	copy fasta	STEEP1	chrX	119533149	119570409
STEEP1_chrX_119533149_119570409	0/0	t0025	1634	1	1	0	0	0	0	copy fasta	STEEP1	chrX	119533149	119570409
STEEP1_chrX_119533149_119570409	0/0	t0026	1634	1	0	0	1	0	0	copy fasta	STEEP1	chrX	119533149	119570409
STEEP1_chrX_119533149_119570409	0/0	t0027	1635	1	0	1	0	0	0	copy fasta	STEEP1	chrX	119533149	119570409