JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
STEEP1_chrX_119533149_119570409	0/0	t0028	1635	1	0	1	0	0	0	copy fasta	STEEP1	chrX	119533149	119570409
STEEP1_chrX_119533149_119570409	0/0	t0029	1633	1	0	1	0	0	0	copy fasta	STEEP1	chrX	119533149	119570409
STH_chr17_45994250_46004694	0/1	t0001	59	400	84	77	183	18	37	copy fasta	STH	chr17	45994250	46004694
STH_chr17_45994250_46004694	0/0	t0002	59	19	14	3	1	0	1	copy fasta	STH	chr17	45994250	46004694
STIL_chr1_47245139_47319147	1/0	t0001	1153	221	50	34	103	8	25	copy fasta	STIL	chr1	47245139	47319147
STIL_chr1_47245139_47319147	0/1	t0002	1151	123	7	25	68	7	15	copy fasta	STIL	chr1	47245139	47319147
STIL_chr1_47245139_47319147	0/0	t0003	1153	26	25	1	0	0	0	copy fasta	STIL	chr1	47245139	47319147
STIL_chr1_47245139_47319147	0/0	t0004	1153	8	8	0	0	0	0	copy fasta	STIL	chr1	47245139	47319147
STIL_chr1_47245139_47319147	0/0	t0005	1151	3	0	0	3	0	0	copy fasta	STIL	chr1	47245139	47319147
STIL_chr1_47245139_47319147	0/0	t0006	1153	2	2	0	0	0	0	copy fasta	STIL	chr1	47245139	47319147
STIL_chr1_47245139_47319147	0/0	t0007	1153	1	0	1	0	0	0	copy fasta	STIL	chr1	47245139	47319147
STIL_chr1_47245139_47319147	0/0	t0008	1153	1	1	0	0	0	0	copy fasta	STIL	chr1	47245139	47319147
STIL_chr1_47245139_47319147	0/0	t0009	1151	1	0	0	1	0	0	copy fasta	STIL	chr1	47245139	47319147
STIL_chr1_47245139_47319147	0/0	t0010	1153	1	0	0	1	0	0	copy fasta	STIL	chr1	47245139	47319147
STIL_chr1_47245139_47319147	0/0	t0011	1151	1	0	0	0	1	0	copy fasta	STIL	chr1	47245139	47319147
STIL_chr1_47245139_47319147	0/0	t0012	1153	1	0	0	1	0	0	copy fasta	STIL	chr1	47245139	47319147
STIL_chr1_47245139_47319147	0/0	t0013	1151	1	1	0	0	0	0	copy fasta	STIL	chr1	47245139	47319147
STIL_chr1_47245139_47319147	0/0	t0014	1153	1	0	1	0	0	0	copy fasta	STIL	chr1	47245139	47319147
STIL_chr1_47245139_47319147	0/0	t0015	1151	1	0	0	1	0	0	copy fasta	STIL	chr1	47245139	47319147
STIM1_chr11_3850664_4098208	0/0	t0001	2013	61	4	11	38	3	5	copy fasta	STIM1	chr11	3850664	4098208
STIM1_chr11_3850664_4098208	0/0	t0002	2018	50	8	10	21	3	8	copy fasta	STIM1	chr11	3850664	4098208
STIM1_chr11_3850664_4098208	1/0	t0003	2018	33	22	5	4	1	0	copy fasta	STIM1	chr11	3850664	4098208
STIM1_chr11_3850664_4098208	0/0	t0004	2018	25	0	0	23	0	2	copy fasta	STIM1	chr11	3850664	4098208
STIM1_chr11_3850664_4098208	0/0	t0005	2018	22	16	1	3	0	2	copy fasta	STIM1	chr11	3850664	4098208
STIM1_chr11_3850664_4098208	0/1	t0006	2018	21	3	8	6	0	3	copy fasta	STIM1	chr11	3850664	4098208
STIM1_chr11_3850664_4098208	0/0	t0007	2018	15	0	4	10	0	1	copy fasta	STIM1	chr11	3850664	4098208
STIM1_chr11_3850664_4098208	0/0	t0008	2013	8	0	2	6	0	0	copy fasta	STIM1	chr11	3850664	4098208
STIM1_chr11_3850664_4098208	0/0	t0009	2018	7	6	0	0	0	1	copy fasta	STIM1	chr11	3850664	4098208
STIM1_chr11_3850664_4098208	0/0	t0010	2013	6	0	0	5	1	0	copy fasta	STIM1	chr11	3850664	4098208
STIM1_chr11_3850664_4098208	0/0	t0011	2013	6	4	1	0	1	0	copy fasta	STIM1	chr11	3850664	4098208
STIM1_chr11_3850664_4098208	0/0	t0012	2018	6	0	0	6	0	0	copy fasta	STIM1	chr11	3850664	4098208
STIM1_chr11_3850664_4098208	0/0	t0013	2013	5	0	0	5	0	0	copy fasta	STIM1	chr11	3850664	4098208
STIM1_chr11_3850664_4098208	0/0	t0014	2018	5	2	1	2	0	0	copy fasta	STIM1	chr11	3850664	4098208
STIM1_chr11_3850664_4098208	0/0	t0015	2018	5	5	0	0	0	0	copy fasta	STIM1	chr11	3850664	4098208
STIM1_chr11_3850664_4098208	0/0	t0016	2018	3	0	1	0	0	2	copy fasta	STIM1	chr11	3850664	4098208
STIM1_chr11_3850664_4098208	0/0	t0017	2013	3	0	0	0	1	2	copy fasta	STIM1	chr11	3850664	4098208
STIM1_chr11_3850664_4098208	0/0	t0018	2018	2	2	0	0	0	0	copy fasta	STIM1	chr11	3850664	4098208
STIM1_chr11_3850664_4098208	0/0	t0019	2018	2	1	1	0	0	0	copy fasta	STIM1	chr11	3850664	4098208
STIM1_chr11_3850664_4098208	0/0	t0020	2018	2	2	0	0	0	0	copy fasta	STIM1	chr11	3850664	4098208
STIM1_chr11_3850664_4098208	0/0	t0021	2013	2	0	0	0	0	2	copy fasta	STIM1	chr11	3850664	4098208
STIM1_chr11_3850664_4098208	0/0	t0022	2013	1	0	0	0	0	1	copy fasta	STIM1	chr11	3850664	4098208
STIM1_chr11_3850664_4098208	0/0	t0023	2013	1	0	0	0	0	1	copy fasta	STIM1	chr11	3850664	4098208
STIM1_chr11_3850664_4098208	0/0	t0024	2013	1	0	0	1	0	0	copy fasta	STIM1	chr11	3850664	4098208
STIM1_chr11_3850664_4098208	0/0	t0025	2018	1	0	0	1	0	0	copy fasta	STIM1	chr11	3850664	4098208
STIM1_chr11_3850664_4098208	0/0	t0026	2018	1	0	0	1	0	0	copy fasta	STIM1	chr11	3850664	4098208
STIM1_chr11_3850664_4098208	0/0	t0027	2018	1	0	0	0	0	1	copy fasta	STIM1	chr11	3850664	4098208
STIM1_chr11_3850664_4098208	0/0	t0028	2018	1	0	0	0	0	1	copy fasta	STIM1	chr11	3850664	4098208
STIM1_chr11_3850664_4098208	0/0	t0029	2013	1	0	1	0	0	0	copy fasta	STIM1	chr11	3850664	4098208
STIM1_chr11_3850664_4098208	0/0	t0030	2018	1	1	0	0	0	0	copy fasta	STIM1	chr11	3850664	4098208
STIM1_chr11_3850664_4098208	0/0	t0031	2018	1	0	0	1	0	0	copy fasta	STIM1	chr11	3850664	4098208