Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
BMP3_chr4_81025708_81062627	0/0	t0012	4672	5	4	1	0	0	0	copy fasta	BMP3	chr4	81025708	81062627
BMP3_chr4_81025708_81062627	0/0	t0013	4666	5	5	0	0	0	0	copy fasta	BMP3	chr4	81025708	81062627
BMP3_chr4_81025708_81062627	0/0	t0014	4667	5	3	2	0	0	0	copy fasta	BMP3	chr4	81025708	81062627
BMP3_chr4_81025708_81062627	0/0	t0015	4665	4	0	0	3	0	1	copy fasta	BMP3	chr4	81025708	81062627
BMP3_chr4_81025708_81062627	0/0	t0016	4672	4	3	1	0	0	0	copy fasta	BMP3	chr4	81025708	81062627
BMP3_chr4_81025708_81062627	0/0	t0017	4666	4	3	1	0	0	0	copy fasta	BMP3	chr4	81025708	81062627
BMP3_chr4_81025708_81062627	0/0	t0018	4672	4	1	2	0	1	0	copy fasta	BMP3	chr4	81025708	81062627
BMP3_chr4_81025708_81062627	0/0	t0019	4664	3	3	0	0	0	0	copy fasta	BMP3	chr4	81025708	81062627
BMP3_chr4_81025708_81062627	0/0	t0020	4673	3	2	0	1	0	0	copy fasta	BMP3	chr4	81025708	81062627
BMP3_chr4_81025708_81062627	0/0	t0021	4665	2	2	0	0	0	0	copy fasta	BMP3	chr4	81025708	81062627
BMP3_chr4_81025708_81062627	0/0	t0022	4665	2	2	0	0	0	0	copy fasta	BMP3	chr4	81025708	81062627
BMP3_chr4_81025708_81062627	0/0	t0023	4666	2	0	1	0	1	0	copy fasta	BMP3	chr4	81025708	81062627
BMP3_chr4_81025708_81062627	0/0	t0024	4668	2	0	0	2	0	0	copy fasta	BMP3	chr4	81025708	81062627
BMP3_chr4_81025708_81062627	0/0	t0025	4666	2	1	0	0	1	0	copy fasta	BMP3	chr4	81025708	81062627
BMP3_chr4_81025708_81062627	0/0	t0026	4665	2	0	2	0	0	0	copy fasta	BMP3	chr4	81025708	81062627
BMP3_chr4_81025708_81062627	0/0	t0027	4667	2	0	2	0	0	0	copy fasta	BMP3	chr4	81025708	81062627
BMP3_chr4_81025708_81062627	0/0	t0028	4672	2	2	0	0	0	0	copy fasta	BMP3	chr4	81025708	81062627
BMP3_chr4_81025708_81062627	0/0	t0029	4666	2	2	0	0	0	0	copy fasta	BMP3	chr4	81025708	81062627
BMP3_chr4_81025708_81062627	0/0	t0030	4664	1	0	1	0	0	0	copy fasta	BMP3	chr4	81025708	81062627
BMP3_chr4_81025708_81062627	0/0	t0031	4666	1	1	0	0	0	0	copy fasta	BMP3	chr4	81025708	81062627
BMP3_chr4_81025708_81062627	0/0	t0032	4663	1	1	0	0	0	0	copy fasta	BMP3	chr4	81025708	81062627
BMP3_chr4_81025708_81062627	0/0	t0033	4670	1	1	0	0	0	0	copy fasta	BMP3	chr4	81025708	81062627
BMP3_chr4_81025708_81062627	0/0	t0034	4664	1	1	0	0	0	0	copy fasta	BMP3	chr4	81025708	81062627
BMP3_chr4_81025708_81062627	0/0	t0035	4671	1	1	0	0	0	0	copy fasta	BMP3	chr4	81025708	81062627
BMP3_chr4_81025708_81062627	0/0	t0036	4665	1	1	0	0	0	0	copy fasta	BMP3	chr4	81025708	81062627
BMP3_chr4_81025708_81062627	0/0	t0037	4664	1	1	0	0	0	0	copy fasta	BMP3	chr4	81025708	81062627
BMP3_chr4_81025708_81062627	0/0	t0038	4666	1	0	0	1	0	0	copy fasta	BMP3	chr4	81025708	81062627
BMP3_chr4_81025708_81062627	0/0	t0039	4666	1	1	0	0	0	0	copy fasta	BMP3	chr4	81025708	81062627
BMP3_chr4_81025708_81062627	0/0	t0040	4666	1	1	0	0	0	0	copy fasta	BMP3	chr4	81025708	81062627
BMP3_chr4_81025708_81062627	0/0	t0041	4672	1	0	0	1	0	0	copy fasta	BMP3	chr4	81025708	81062627
BMP3_chr4_81025708_81062627	0/0	t0042	4666	1	0	0	1	0	0	copy fasta	BMP3	chr4	81025708	81062627
BMP3_chr4_81025708_81062627	0/0	t0043	4666	1	0	0	1	0	0	copy fasta	BMP3	chr4	81025708	81062627
BMP3_chr4_81025708_81062627	0/0	t0044	4666	1	0	0	1	0	0	copy fasta	BMP3	chr4	81025708	81062627
BMP3_chr4_81025708_81062627	0/0	t0045	4665	1	0	0	1	0	0	copy fasta	BMP3	chr4	81025708	81062627
BMP3_chr4_81025708_81062627	0/0	t0046	4665	1	0	0	1	0	0	copy fasta	BMP3	chr4	81025708	81062627
BMP3_chr4_81025708_81062627	0/0	t0047	4667	1	1	0	0	0	0	copy fasta	BMP3	chr4	81025708	81062627
BMP3_chr4_81025708_81062627	0/0	t0048	4667	1	0	1	0	0	0	copy fasta	BMP3	chr4	81025708	81062627
BMP3_chr4_81025708_81062627	0/0	t0049	4669	1	0	0	1	0	0	copy fasta	BMP3	chr4	81025708	81062627
BMP3_chr4_81025708_81062627	0/0	t0050	4671	1	1	0	0	0	0	copy fasta	BMP3	chr4	81025708	81062627
BMP3_chr4_81025708_81062627	0/0	t0051	4667	1	0	1	0	0	0	copy fasta	BMP3	chr4	81025708	81062627
BMP3_chr4_81025708_81062627	0/0	t0052	4667	1	0	0	1	0	0	copy fasta	BMP3	chr4	81025708	81062627
BMP3_chr4_81025708_81062627	0/0	t0053	4667	1	1	0	0	0	0	copy fasta	BMP3	chr4	81025708	81062627
BMP3_chr4_81025708_81062627	0/0	t0054	4664	1	1	0	0	0	0	copy fasta	BMP3	chr4	81025708	81062627
BMP3_chr4_81025708_81062627	1/0	t0055	4669	1	0	0	0	0	0	copy fasta	BMP3	chr4	81025708	81062627
BMP3_chr4_81025708_81062627	0/0	t0056	4666	1	1	0	0	0	0	copy fasta	BMP3	chr4	81025708	81062627
BMP4_chr14_53944736_53961825	1/0	t0001	705	267	48	42	148	9	19	copy fasta	BMP4	chr14	53944736	53961825
BMP4_chr14_53944736_53961825	0/1	t0002	707	86	6	26	36	5	12	copy fasta	BMP4	chr14	53944736	53961825
BMP4_chr14_53944736_53961825	0/0	t0003	708	26	6	4	12	1	3	copy fasta	BMP4	chr14	53944736	53961825
BMP4_chr14_53944736_53961825	0/0	t0004	708	23	21	1	0	1	0	copy fasta	BMP4	chr14	53944736	53961825
BMP4_chr14_53944736_53961825	0/0	t0005	703	13	5	3	0	0	5	copy fasta	BMP4	chr14	53944736	53961825