JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
STIM1_chr11_3850664_4098208	0/0	t0032	2018	1	0	0	1	0	0	copy fasta	STIM1	chr11	3850664	4098208
STIM2_chr4_26855841_27030381	0/1	t0001	2763	64	12	15	27	0	9	copy fasta	STIM2	chr4	26855841	27030381
STIM2_chr4_26855841_27030381	0/0	t0002	2764	52	6	3	39	1	3	copy fasta	STIM2	chr4	26855841	27030381
STIM2_chr4_26855841_27030381	0/0	t0003	2764	46	6	11	23	2	4	copy fasta	STIM2	chr4	26855841	27030381
STIM2_chr4_26855841_27030381	0/0	t0004	2763	40	1	5	25	1	8	copy fasta	STIM2	chr4	26855841	27030381
STIM2_chr4_26855841_27030381	0/0	t0005	2764	18	8	1	8	0	1	copy fasta	STIM2	chr4	26855841	27030381
STIM2_chr4_26855841_27030381	0/0	t0006	2762	12	0	6	4	2	0	copy fasta	STIM2	chr4	26855841	27030381
STIM2_chr4_26855841_27030381	0/0	t0007	2765	11	7	1	3	0	0	copy fasta	STIM2	chr4	26855841	27030381
STIM2_chr4_26855841_27030381	0/0	t0008	2763	10	0	0	10	0	0	copy fasta	STIM2	chr4	26855841	27030381
STIM2_chr4_26855841_27030381	0/0	t0009	2762	9	4	3	0	0	2	copy fasta	STIM2	chr4	26855841	27030381
STIM2_chr4_26855841_27030381	0/0	t0010	2761	8	5	3	0	0	0	copy fasta	STIM2	chr4	26855841	27030381
STIM2_chr4_26855841_27030381	1/0	t0011	2764	7	2	0	4	0	0	copy fasta	STIM2	chr4	26855841	27030381
STIM2_chr4_26855841_27030381	0/0	t0012	2761	5	5	0	0	0	0	copy fasta	STIM2	chr4	26855841	27030381
STIM2_chr4_26855841_27030381	0/0	t0013	2760	4	4	0	0	0	0	copy fasta	STIM2	chr4	26855841	27030381
STIM2_chr4_26855841_27030381	0/0	t0014	2764	4	0	1	1	0	2	copy fasta	STIM2	chr4	26855841	27030381
STIM2_chr4_26855841_27030381	0/0	t0015	2764	4	4	0	0	0	0	copy fasta	STIM2	chr4	26855841	27030381
STIM2_chr4_26855841_27030381	0/0	t0016	2763	3	2	1	0	0	0	copy fasta	STIM2	chr4	26855841	27030381
STIM2_chr4_26855841_27030381	0/0	t0017	2764	3	0	3	0	0	0	copy fasta	STIM2	chr4	26855841	27030381
STIM2_chr4_26855841_27030381	0/0	t0018	2762	3	1	1	0	0	1	copy fasta	STIM2	chr4	26855841	27030381
STIM2_chr4_26855841_27030381	0/0	t0019	2762	2	2	0	0	0	0	copy fasta	STIM2	chr4	26855841	27030381
STIM2_chr4_26855841_27030381	0/0	t0020	2763	2	0	1	1	0	0	copy fasta	STIM2	chr4	26855841	27030381
STIM2_chr4_26855841_27030381	0/0	t0021	2764	2	2	0	0	0	0	copy fasta	STIM2	chr4	26855841	27030381
STIM2_chr4_26855841_27030381	0/0	t0022	2764	2	0	0	2	0	0	copy fasta	STIM2	chr4	26855841	27030381
STIM2_chr4_26855841_27030381	0/0	t0023	2763	2	0	1	1	0	0	copy fasta	STIM2	chr4	26855841	27030381
STIM2_chr4_26855841_27030381	0/0	t0024	2765	2	0	0	0	1	1	copy fasta	STIM2	chr4	26855841	27030381
STIM2_chr4_26855841_27030381	0/0	t0025	2762	1	1	0	0	0	0	copy fasta	STIM2	chr4	26855841	27030381
STIM2_chr4_26855841_27030381	0/0	t0026	2762	1	1	0	0	0	0	copy fasta	STIM2	chr4	26855841	27030381
STIM2_chr4_26855841_27030381	0/0	t0027	2763	1	1	0	0	0	0	copy fasta	STIM2	chr4	26855841	27030381
STIM2_chr4_26855841_27030381	0/0	t0028	2762	1	1	0	0	0	0	copy fasta	STIM2	chr4	26855841	27030381
STIM2_chr4_26855841_27030381	0/0	t0029	2761	1	0	1	0	0	0	copy fasta	STIM2	chr4	26855841	27030381
STIM2_chr4_26855841_27030381	0/0	t0030	2761	1	1	0	0	0	0	copy fasta	STIM2	chr4	26855841	27030381
STIM2_chr4_26855841_27030381	0/0	t0031	2764	1	0	0	1	0	0	copy fasta	STIM2	chr4	26855841	27030381
STIM2_chr4_26855841_27030381	0/0	t0032	2763	1	0	0	1	0	0	copy fasta	STIM2	chr4	26855841	27030381
STIM2_chr4_26855841_27030381	0/0	t0033	2765	1	1	0	0	0	0	copy fasta	STIM2	chr4	26855841	27030381
STIM2_chr4_26855841_27030381	0/0	t0034	2764	1	1	0	0	0	0	copy fasta	STIM2	chr4	26855841	27030381
STIM2_chr4_26855841_27030381	0/0	t0035	2764	1	0	0	1	0	0	copy fasta	STIM2	chr4	26855841	27030381
STIM2_chr4_26855841_27030381	0/0	t0036	2764	1	1	0	0	0	0	copy fasta	STIM2	chr4	26855841	27030381
STIM2_chr4_26855841_27030381	0/0	t0037	2762	1	0	0	0	0	1	copy fasta	STIM2	chr4	26855841	27030381
STIM2_chr4_26855841_27030381	0/0	t0038	2762	1	0	0	0	1	0	copy fasta	STIM2	chr4	26855841	27030381
STIM2_chr4_26855841_27030381	0/0	t0039	2764	1	0	0	0	0	1	copy fasta	STIM2	chr4	26855841	27030381
STIM2_chr4_26855841_27030381	0/0	t0040	2764	1	0	0	1	0	0	copy fasta	STIM2	chr4	26855841	27030381
STIM2_chr4_26855841_27030381	0/0	t0041	2763	1	0	0	1	0	0	copy fasta	STIM2	chr4	26855841	27030381
STIM2_chr4_26855841_27030381	0/0	t0042	2765	1	0	1	0	0	0	copy fasta	STIM2	chr4	26855841	27030381
STIM2_chr4_26855841_27030381	0/0	t0043	2765	1	0	0	0	0	1	copy fasta	STIM2	chr4	26855841	27030381
STIM2_chr4_26855841_27030381	0/0	t0044	2765	1	0	0	1	0	0	copy fasta	STIM2	chr4	26855841	27030381
STIM2_chr4_26855841_27030381	0/0	t0045	2763	1	1	0	0	0	0	copy fasta	STIM2	chr4	26855841	27030381
STIMATE_chr3_52831733_52902548	0/1	t0001	3841	123	17	29	53	3	20	copy fasta	STIMATE	chr3	52831733	52902548
STIMATE_chr3_52831733_52902548	0/0	t0002	3841	93	5	22	60	2	4	copy fasta	STIMATE	chr3	52831733	52902548
STIMATE_chr3_52831733_52902548	0/0	t0003	3841	30	3	15	10	1	1	copy fasta	STIMATE	chr3	52831733	52902548
STIMATE_chr3_52831733_52902548	0/0	t0004	3860	18	17	1	0	0	0	copy fasta	STIMATE	chr3	52831733	52902548