JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
STIMATE_chr3_52831733_52902548	1/0	t0005	3860	13	11	1	0	0	0	copy fasta	STIMATE	chr3	52831733	52902548
STIMATE_chr3_52831733_52902548	0/0	t0006	3861	13	0	0	2	0	11	copy fasta	STIMATE	chr3	52831733	52902548
STIMATE_chr3_52831733_52902548	0/0	t0007	3841	12	10	2	0	0	0	copy fasta	STIMATE	chr3	52831733	52902548
STIMATE_chr3_52831733_52902548	0/0	t0008	3841	6	6	0	0	0	0	copy fasta	STIMATE	chr3	52831733	52902548
STIMATE_chr3_52831733_52902548	0/0	t0009	3860	3	2	1	0	0	0	copy fasta	STIMATE	chr3	52831733	52902548
STIMATE_chr3_52831733_52902548	0/0	t0010	3860	3	3	0	0	0	0	copy fasta	STIMATE	chr3	52831733	52902548
STIMATE_chr3_52831733_52902548	0/0	t0011	3841	2	0	0	2	0	0	copy fasta	STIMATE	chr3	52831733	52902548
STIMATE_chr3_52831733_52902548	0/0	t0012	3841	2	0	0	2	0	0	copy fasta	STIMATE	chr3	52831733	52902548
STIMATE_chr3_52831733_52902548	0/0	t0013	3841	2	1	0	0	0	1	copy fasta	STIMATE	chr3	52831733	52902548
STIMATE_chr3_52831733_52902548	0/0	t0014	3841	1	0	1	0	0	0	copy fasta	STIMATE	chr3	52831733	52902548
STIMATE_chr3_52831733_52902548	0/0	t0015	3841	1	0	0	0	0	1	copy fasta	STIMATE	chr3	52831733	52902548
STIMATE_chr3_52831733_52902548	0/0	t0016	3841	1	0	0	1	0	0	copy fasta	STIMATE	chr3	52831733	52902548
STIMATE_chr3_52831733_52902548	0/0	t0017	3841	1	1	0	0	0	0	copy fasta	STIMATE	chr3	52831733	52902548
STIMATE_chr3_52831733_52902548	0/0	t0018	3841	1	1	0	0	0	0	copy fasta	STIMATE	chr3	52831733	52902548
STIMATE_chr3_52831733_52902548	0/0	t0019	3841	1	1	0	0	0	0	copy fasta	STIMATE	chr3	52831733	52902548
STIMATE_chr3_52831733_52902548	0/0	t0020	3841	1	1	0	0	0	0	copy fasta	STIMATE	chr3	52831733	52902548
STIMATE_chr3_52831733_52902548	0/0	t0021	3861	1	0	0	0	0	1	copy fasta	STIMATE	chr3	52831733	52902548
STIMATE_chr3_52831733_52902548	0/0	t0022	3841	1	1	0	0	0	0	copy fasta	STIMATE	chr3	52831733	52902548
STIMATE_chr3_52831733_52902548	0/0	t0023	3841	1	0	0	0	0	1	copy fasta	STIMATE	chr3	52831733	52902548
STIMATE_chr3_52831733_52902548	0/0	t0024	3841	1	0	0	1	0	0	copy fasta	STIMATE	chr3	52831733	52902548
STIMATE_chr3_52831733_52902548	0/0	t0025	3841	1	1	0	0	0	0	copy fasta	STIMATE	chr3	52831733	52902548
STIMATE_chr3_52831733_52902548	0/0	t0026	3841	1	0	0	1	0	0	copy fasta	STIMATE	chr3	52831733	52902548
STIMATE_chr3_52831733_52902548	0/0	t0027	3841	1	1	0	0	0	0	copy fasta	STIMATE	chr3	52831733	52902548
STING1_chr5_139470533_139487758	1/1	t0001	1031	420	88	69	199	16	46	copy fasta	STING1	chr5	139470533	139487758
STING1_chr5_139470533_139487758	0/0	t0002	1031	5	5	0	0	0	0	copy fasta	STING1	chr5	139470533	139487758
STING1_chr5_139470533_139487758	0/0	t0003	1031	1	0	0	1	0	0	copy fasta	STING1	chr5	139470533	139487758
STING1_chr5_139470533_139487758	0/0	t0004	1031	1	0	0	1	0	0	copy fasta	STING1	chr5	139470533	139487758
STING1_chr5_139470533_139487758	0/0	t0005	1031	1	1	0	0	0	0	copy fasta	STING1	chr5	139470533	139487758
STING1_chr5_139470533_139487758	0/0	t0006	1031	1	1	0	0	0	0	copy fasta	STING1	chr5	139470533	139487758
STING1_chr5_139470533_139487758	0/0	t0007	1031	1	0	0	1	0	0	copy fasta	STING1	chr5	139470533	139487758
STING1_chr5_139470533_139487758	0/0	t0008	1031	1	1	0	0	0	0	copy fasta	STING1	chr5	139470533	139487758
STING1_chr5_139470533_139487758	0/0	t0009	1031	1	0	0	1	0	0	copy fasta	STING1	chr5	139470533	139487758
STING1_chr5_139470533_139487758	0/0	t0010	1031	1	0	1	0	0	0	copy fasta	STING1	chr5	139470533	139487758
STING1_chr5_139470533_139487758	0/0	t0011	1031	1	0	0	1	0	0	copy fasta	STING1	chr5	139470533	139487758
STIP1_chr11_64181171_64209543	1/1	t0001	509	356	88	70	142	14	40	copy fasta	STIP1	chr11	64181171	64209543
STIP1_chr11_64181171_64209543	0/0	t0002	510	20	0	0	20	0	0	copy fasta	STIP1	chr11	64181171	64209543
STIP1_chr11_64181171_64209543	0/0	t0003	509	1	0	0	1	0	0	copy fasta	STIP1	chr11	64181171	64209543
STIP1_chr11_64181171_64209543	0/0	t0004	510	1	0	0	1	0	0	copy fasta	STIP1	chr11	64181171	64209543
STK10_chr5_172037079_172193224	1/1	t0001	2986	142	24	37	46	10	23	copy fasta	STK10	chr5	172037079	172193224
STK10_chr5_172037079_172193224	0/0	t0002	2986	12	9	2	0	0	1	copy fasta	STK10	chr5	172037079	172193224
STK10_chr5_172037079_172193224	0/0	t0003	2985	8	4	4	0	0	0	copy fasta	STK10	chr5	172037079	172193224
STK10_chr5_172037079_172193224	0/0	t0004	2985	7	4	0	2	0	1	copy fasta	STK10	chr5	172037079	172193224
STK10_chr5_172037079_172193224	0/0	t0005	2985	5	0	3	2	0	0	copy fasta	STK10	chr5	172037079	172193224
STK10_chr5_172037079_172193224	0/0	t0006	2985	5	5	0	0	0	0	copy fasta	STK10	chr5	172037079	172193224
STK10_chr5_172037079_172193224	0/0	t0007	2985	4	4	0	0	0	0	copy fasta	STK10	chr5	172037079	172193224
STK10_chr5_172037079_172193224	0/0	t0008	2985	3	2	1	0	0	0	copy fasta	STK10	chr5	172037079	172193224
STK10_chr5_172037079_172193224	0/0	t0009	2985	3	3	0	0	0	0	copy fasta	STK10	chr5	172037079	172193224
STK10_chr5_172037079_172193224	0/0	t0010	2985	3	3	0	0	0	0	copy fasta	STK10	chr5	172037079	172193224
STK10_chr5_172037079_172193224	0/0	t0011	2985	3	3	0	0	0	0	copy fasta	STK10	chr5	172037079	172193224
STK10_chr5_172037079_172193224	0/0	t0012	2984	3	3	0	0	0	0	copy fasta	STK10	chr5	172037079	172193224