JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
STK10_chr5_172037079_172193224	0/0	t0013	2985	2	1	1	0	0	0	copy fasta	STK10	chr5	172037079	172193224
STK10_chr5_172037079_172193224	0/0	t0014	2985	2	2	0	0	0	0	copy fasta	STK10	chr5	172037079	172193224
STK10_chr5_172037079_172193224	0/0	t0015	2985	2	2	0	0	0	0	copy fasta	STK10	chr5	172037079	172193224
STK10_chr5_172037079_172193224	0/0	t0016	2985	2	2	0	0	0	0	copy fasta	STK10	chr5	172037079	172193224
STK10_chr5_172037079_172193224	0/0	t0017	2985	2	2	0	0	0	0	copy fasta	STK10	chr5	172037079	172193224
STK10_chr5_172037079_172193224	0/0	t0018	2986	1	1	0	0	0	0	copy fasta	STK10	chr5	172037079	172193224
STK10_chr5_172037079_172193224	0/0	t0019	2985	1	1	0	0	0	0	copy fasta	STK10	chr5	172037079	172193224
STK10_chr5_172037079_172193224	0/0	t0020	2985	1	1	0	0	0	0	copy fasta	STK10	chr5	172037079	172193224
STK10_chr5_172037079_172193224	0/0	t0021	2986	1	1	0	0	0	0	copy fasta	STK10	chr5	172037079	172193224
STK10_chr5_172037079_172193224	0/0	t0022	2986	1	1	0	0	0	0	copy fasta	STK10	chr5	172037079	172193224
STK10_chr5_172037079_172193224	0/0	t0023	2986	1	1	0	0	0	0	copy fasta	STK10	chr5	172037079	172193224
STK10_chr5_172037079_172193224	0/0	t0024	2986	1	0	1	0	0	0	copy fasta	STK10	chr5	172037079	172193224
STK10_chr5_172037079_172193224	0/0	t0025	2986	1	1	0	0	0	0	copy fasta	STK10	chr5	172037079	172193224
STK10_chr5_172037079_172193224	0/0	t0026	2986	1	1	0	0	0	0	copy fasta	STK10	chr5	172037079	172193224
STK10_chr5_172037079_172193224	0/0	t0027	2986	1	1	0	0	0	0	copy fasta	STK10	chr5	172037079	172193224
STK10_chr5_172037079_172193224	0/0	t0028	2986	1	0	0	1	0	0	copy fasta	STK10	chr5	172037079	172193224
STK10_chr5_172037079_172193224	0/0	t0029	2986	1	1	0	0	0	0	copy fasta	STK10	chr5	172037079	172193224
STK10_chr5_172037079_172193224	0/0	t0030	2985	1	0	1	0	0	0	copy fasta	STK10	chr5	172037079	172193224
STK10_chr5_172037079_172193224	0/0	t0031	2985	1	1	0	0	0	0	copy fasta	STK10	chr5	172037079	172193224
STK10_chr5_172037079_172193224	0/0	t0032	2986	1	0	0	0	0	1	copy fasta	STK10	chr5	172037079	172193224
STK10_chr5_172037079_172193224	0/0	t0033	2985	1	1	0	0	0	0	copy fasta	STK10	chr5	172037079	172193224
STK10_chr5_172037079_172193224	0/0	t0034	2986	1	1	0	0	0	0	copy fasta	STK10	chr5	172037079	172193224
STK10_chr5_172037079_172193224	0/0	t0035	2985	1	1	0	0	0	0	copy fasta	STK10	chr5	172037079	172193224
STK10_chr5_172037079_172193224	0/0	t0036	2985	1	1	0	0	0	0	copy fasta	STK10	chr5	172037079	172193224
STK10_chr5_172037079_172193224	0/0	t0037	2986	1	0	0	1	0	0	copy fasta	STK10	chr5	172037079	172193224
STK10_chr5_172037079_172193224	0/0	t0038	2985	1	1	0	0	0	0	copy fasta	STK10	chr5	172037079	172193224
STK10_chr5_172037079_172193224	0/0	t0039	2986	1	1	0	0	0	0	copy fasta	STK10	chr5	172037079	172193224
STK10_chr5_172037079_172193224	0/0	t0040	2986	1	1	0	0	0	0	copy fasta	STK10	chr5	172037079	172193224
STK10_chr5_172037079_172193224	0/0	t0041	2985	1	1	0	0	0	0	copy fasta	STK10	chr5	172037079	172193224
STK11IP_chr2_219592857_219621451	0/1	t0001	352	267	30	68	116	16	36	copy fasta	STK11IP	chr2	219592857	219621451
STK11IP_chr2_219592857_219621451	1/0	t0002	352	74	66	6	0	0	1	copy fasta	STK11IP	chr2	219592857	219621451
STK11IP_chr2_219592857_219621451	0/0	t0003	352	1	0	0	0	0	1	copy fasta	STK11IP	chr2	219592857	219621451
STK11_chr19_1200778_1233431	0/1	t0001	1992	245	49	35	131	5	24	copy fasta	STK11	chr19	1200778	1233431
STK11_chr19_1200778_1233431	1/0	t0002	1992	70	11	32	1	7	18	copy fasta	STK11	chr19	1200778	1233431
STK11_chr19_1200778_1233431	0/0	t0003	1992	37	12	1	20	1	3	copy fasta	STK11	chr19	1200778	1233431
STK11_chr19_1200778_1233431	0/0	t0004	1991	10	1	4	5	0	0	copy fasta	STK11	chr19	1200778	1233431
STK11_chr19_1200778_1233431	0/0	t0005	1992	8	6	2	0	0	0	copy fasta	STK11	chr19	1200778	1233431
STK11_chr19_1200778_1233431	0/0	t0006	1993	4	0	0	3	1	0	copy fasta	STK11	chr19	1200778	1233431
STK11_chr19_1200778_1233431	0/0	t0007	1991	4	0	3	0	1	0	copy fasta	STK11	chr19	1200778	1233431
STK11_chr19_1200778_1233431	0/0	t0008	1991	3	1	1	1	0	0	copy fasta	STK11	chr19	1200778	1233431
STK11_chr19_1200778_1233431	0/0	t0009	1992	3	2	1	0	0	0	copy fasta	STK11	chr19	1200778	1233431
STK11_chr19_1200778_1233431	0/0	t0010	1992	3	3	0	0	0	0	copy fasta	STK11	chr19	1200778	1233431
STK11_chr19_1200778_1233431	0/0	t0011	1992	2	0	0	2	0	0	copy fasta	STK11	chr19	1200778	1233431
STK11_chr19_1200778_1233431	0/0	t0012	1972	2	0	0	2	0	0	copy fasta	STK11	chr19	1200778	1233431
STK11_chr19_1200778_1233431	0/0	t0013	1992	2	2	0	0	0	0	copy fasta	STK11	chr19	1200778	1233431
STK11_chr19_1200778_1233431	0/0	t0014	1992	1	1	0	0	0	0	copy fasta	STK11	chr19	1200778	1233431
STK11_chr19_1200778_1233431	0/0	t0015	1992	1	0	0	1	0	0	copy fasta	STK11	chr19	1200778	1233431
STK11_chr19_1200778_1233431	0/0	t0016	1992	1	0	1	0	0	0	copy fasta	STK11	chr19	1200778	1233431
STK11_chr19_1200778_1233431	0/0	t0017	1992	1	1	0	0	0	0	copy fasta	STK11	chr19	1200778	1233431
STK11_chr19_1200778_1233431	0/0	t0018	1992	1	0	0	1	0	0	copy fasta	STK11	chr19	1200778	1233431