JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
STK11_chr19_1200778_1233431	0/0	t0019	1977	1	0	0	1	0	0	copy fasta	STK11	chr19	1200778	1233431
STK11_chr19_1200778_1233431	0/0	t0020	1992	1	0	0	0	0	1	copy fasta	STK11	chr19	1200778	1233431
STK11_chr19_1200778_1233431	0/0	t0021	1992	1	0	0	1	0	0	copy fasta	STK11	chr19	1200778	1233431
STK11_chr19_1200778_1233431	0/0	t0022	1992	1	0	0	1	0	0	copy fasta	STK11	chr19	1200778	1233431
STK11_chr19_1200778_1233431	0/0	t0023	1992	1	0	0	0	1	0	copy fasta	STK11	chr19	1200778	1233431
STK11_chr19_1200778_1233431	0/0	t0024	1992	1	1	0	0	0	0	copy fasta	STK11	chr19	1200778	1233431
STK11_chr19_1200778_1233431	0/0	t0025	2003	1	0	0	1	0	0	copy fasta	STK11	chr19	1200778	1233431
STK11_chr19_1200778_1233431	0/0	t0026	1981	1	0	0	1	0	0	copy fasta	STK11	chr19	1200778	1233431
STK16_chr2_219240479_219255337	1/0	t0001	2201	151	17	32	93	0	8	copy fasta	STK16	chr2	219240479	219255337
STK16_chr2_219240479_219255337	0/1	t0002	2201	113	8	22	51	12	19	copy fasta	STK16	chr2	219240479	219255337
STK16_chr2_219240479_219255337	0/0	t0003	2201	66	17	13	17	2	17	copy fasta	STK16	chr2	219240479	219255337
STK16_chr2_219240479_219255337	0/0	t0004	2201	33	16	0	16	0	1	copy fasta	STK16	chr2	219240479	219255337
STK16_chr2_219240479_219255337	0/0	t0005	2201	17	17	0	0	0	0	copy fasta	STK16	chr2	219240479	219255337
STK16_chr2_219240479_219255337	0/0	t0006	2201	7	0	6	0	1	0	copy fasta	STK16	chr2	219240479	219255337
STK16_chr2_219240479_219255337	0/0	t0007	2201	3	0	2	1	0	0	copy fasta	STK16	chr2	219240479	219255337
STK16_chr2_219240479_219255337	0/0	t0008	2201	3	3	0	0	0	0	copy fasta	STK16	chr2	219240479	219255337
STK16_chr2_219240479_219255337	0/0	t0009	2201	3	0	0	3	0	0	copy fasta	STK16	chr2	219240479	219255337
STK16_chr2_219240479_219255337	0/0	t0010	2201	2	0	0	2	0	0	copy fasta	STK16	chr2	219240479	219255337
STK16_chr2_219240479_219255337	0/0	t0011	2201	2	0	1	0	1	0	copy fasta	STK16	chr2	219240479	219255337
STK16_chr2_219240479_219255337	0/0	t0012	2201	2	2	0	0	0	0	copy fasta	STK16	chr2	219240479	219255337
STK16_chr2_219240479_219255337	0/0	t0013	2201	2	2	0	0	0	0	copy fasta	STK16	chr2	219240479	219255337
STK16_chr2_219240479_219255337	0/0	t0014	2201	1	0	0	1	0	0	copy fasta	STK16	chr2	219240479	219255337
STK16_chr2_219240479_219255337	0/0	t0015	2201	1	0	0	1	0	0	copy fasta	STK16	chr2	219240479	219255337
STK16_chr2_219240479_219255337	0/0	t0016	2201	1	1	0	0	0	0	copy fasta	STK16	chr2	219240479	219255337
STK16_chr2_219240479_219255337	0/0	t0017	2201	1	0	0	0	0	1	copy fasta	STK16	chr2	219240479	219255337
STK16_chr2_219240479_219255337	0/0	t0018	2201	1	0	0	1	0	0	copy fasta	STK16	chr2	219240479	219255337
STK16_chr2_219240479_219255337	0/0	t0019	2201	1	1	0	0	0	0	copy fasta	STK16	chr2	219240479	219255337
STK17A_chr7_43578108_43632379	0/0	t0001	2672	136	31	28	56	5	16	copy fasta	STK17A	chr7	43578108	43632379
STK17A_chr7_43578108_43632379	1/0	t0002	2674	80	5	11	50	5	8	copy fasta	STK17A	chr7	43578108	43632379
STK17A_chr7_43578108_43632379	0/0	t0003	2672	74	11	14	44	1	4	copy fasta	STK17A	chr7	43578108	43632379
STK17A_chr7_43578108_43632379	0/1	t0004	2674	30	5	5	16	2	1	copy fasta	STK17A	chr7	43578108	43632379
STK17A_chr7_43578108_43632379	0/0	t0005	2672	11	10	1	0	0	0	copy fasta	STK17A	chr7	43578108	43632379
STK17A_chr7_43578108_43632379	0/0	t0006	2688	9	0	6	0	2	1	copy fasta	STK17A	chr7	43578108	43632379
STK17A_chr7_43578108_43632379	0/0	t0007	2672	8	7	1	0	0	0	copy fasta	STK17A	chr7	43578108	43632379
STK17A_chr7_43578108_43632379	0/0	t0008	2672	7	7	0	0	0	0	copy fasta	STK17A	chr7	43578108	43632379
STK17A_chr7_43578108_43632379	0/0	t0009	2686	5	0	1	1	2	1	copy fasta	STK17A	chr7	43578108	43632379
STK17A_chr7_43578108_43632379	0/0	t0010	2674	5	0	0	5	0	0	copy fasta	STK17A	chr7	43578108	43632379
STK17A_chr7_43578108_43632379	0/0	t0011	2684	3	0	3	0	0	0	copy fasta	STK17A	chr7	43578108	43632379
STK17A_chr7_43578108_43632379	0/0	t0012	2674	3	0	3	0	0	0	copy fasta	STK17A	chr7	43578108	43632379
STK17A_chr7_43578108_43632379	0/0	t0013	2690	3	0	2	0	0	1	copy fasta	STK17A	chr7	43578108	43632379
STK17A_chr7_43578108_43632379	0/0	t0014	2674	2	0	0	0	0	2	copy fasta	STK17A	chr7	43578108	43632379
STK17A_chr7_43578108_43632379	0/0	t0015	2684	2	2	0	0	0	0	copy fasta	STK17A	chr7	43578108	43632379
STK17A_chr7_43578108_43632379	0/0	t0016	2674	1	0	0	1	0	0	copy fasta	STK17A	chr7	43578108	43632379
STK17A_chr7_43578108_43632379	0/0	t0017	2672	1	1	0	0	0	0	copy fasta	STK17A	chr7	43578108	43632379
STK17A_chr7_43578108_43632379	0/0	t0018	2674	1	0	0	1	0	0	copy fasta	STK17A	chr7	43578108	43632379
STK17A_chr7_43578108_43632379	0/0	t0019	2694	1	0	0	0	0	1	copy fasta	STK17A	chr7	43578108	43632379
STK17A_chr7_43578108_43632379	0/0	t0020	2674	1	0	0	0	0	1	copy fasta	STK17A	chr7	43578108	43632379
STK17A_chr7_43578108_43632379	0/0	t0021	2672	1	0	0	1	0	0	copy fasta	STK17A	chr7	43578108	43632379
STK17A_chr7_43578108_43632379	0/0	t0022	2674	1	0	0	0	1	0	copy fasta	STK17A	chr7	43578108	43632379
STK17A_chr7_43578108_43632379	0/0	t0023	2672	1	0	0	1	0	0	copy fasta	STK17A	chr7	43578108	43632379