JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
STK17A_chr7_43578108_43632379	0/0	t0024	2672	1	0	0	1	0	0	copy fasta	STK17A	chr7	43578108	43632379
STK17A_chr7_43578108_43632379	0/0	t0025	2672	1	1	0	0	0	0	copy fasta	STK17A	chr7	43578108	43632379
STK17A_chr7_43578108_43632379	0/0	t0026	2674	1	0	1	0	0	0	copy fasta	STK17A	chr7	43578108	43632379
STK17A_chr7_43578108_43632379	0/0	t0027	2674	1	0	0	1	0	0	copy fasta	STK17A	chr7	43578108	43632379
STK17A_chr7_43578108_43632379	0/0	t0028	2672	1	0	0	1	0	0	copy fasta	STK17A	chr7	43578108	43632379
STK17A_chr7_43578108_43632379	0/0	t0029	2664	1	0	0	1	0	0	copy fasta	STK17A	chr7	43578108	43632379
STK17B_chr2_196128583_196176578	0/0	t0001	4161	59	7	13	27	3	9	copy fasta	STK17B	chr2	196128583	196176578
STK17B_chr2_196128583_196176578	0/0	t0002	4162	57	0	13	37	0	7	copy fasta	STK17B	chr2	196128583	196176578
STK17B_chr2_196128583_196176578	0/1	t0003	4155	44	20	13	0	3	7	copy fasta	STK17B	chr2	196128583	196176578
STK17B_chr2_196128583_196176578	0/0	t0004	4167	40	25	3	11	0	1	copy fasta	STK17B	chr2	196128583	196176578
STK17B_chr2_196128583_196176578	0/0	t0005	4168	34	1	2	30	0	1	copy fasta	STK17B	chr2	196128583	196176578
STK17B_chr2_196128583_196176578	0/0	t0006	4155	17	0	2	13	1	1	copy fasta	STK17B	chr2	196128583	196176578
STK17B_chr2_196128583_196176578	0/0	t0007	4166	11	9	1	1	0	0	copy fasta	STK17B	chr2	196128583	196176578
STK17B_chr2_196128583_196176578	0/0	t0008	4155	10	1	2	1	3	3	copy fasta	STK17B	chr2	196128583	196176578
STK17B_chr2_196128583_196176578	0/0	t0009	4155	10	10	0	0	0	0	copy fasta	STK17B	chr2	196128583	196176578
STK17B_chr2_196128583_196176578	0/0	t0010	4161	9	0	3	0	1	5	copy fasta	STK17B	chr2	196128583	196176578
STK17B_chr2_196128583_196176578	0/0	t0011	4163	7	1	1	5	0	0	copy fasta	STK17B	chr2	196128583	196176578
STK17B_chr2_196128583_196176578	0/0	t0012	4155	6	6	0	0	0	0	copy fasta	STK17B	chr2	196128583	196176578
STK17B_chr2_196128583_196176578	0/0	t0013	4169	6	0	0	6	0	0	copy fasta	STK17B	chr2	196128583	196176578
STK17B_chr2_196128583_196176578	0/0	t0014	4156	5	2	2	0	0	1	copy fasta	STK17B	chr2	196128583	196176578
STK17B_chr2_196128583_196176578	0/0	t0015	4161	4	0	0	4	0	0	copy fasta	STK17B	chr2	196128583	196176578
STK17B_chr2_196128583_196176578	0/0	t0016	4155	3	0	2	0	1	0	copy fasta	STK17B	chr2	196128583	196176578
STK17B_chr2_196128583_196176578	0/0	t0017	4160	3	0	2	0	1	0	copy fasta	STK17B	chr2	196128583	196176578
STK17B_chr2_196128583_196176578	0/0	t0018	4155	3	0	0	3	0	0	copy fasta	STK17B	chr2	196128583	196176578
STK17B_chr2_196128583_196176578	0/0	t0019	4168	2	0	0	2	0	0	copy fasta	STK17B	chr2	196128583	196176578
STK17B_chr2_196128583_196176578	0/0	t0020	4165	2	2	0	0	0	0	copy fasta	STK17B	chr2	196128583	196176578
STK17B_chr2_196128583_196176578	0/0	t0021	4155	2	2	0	0	0	0	copy fasta	STK17B	chr2	196128583	196176578
STK17B_chr2_196128583_196176578	0/0	t0022	4162	1	1	0	0	0	0	copy fasta	STK17B	chr2	196128583	196176578
STK17B_chr2_196128583_196176578	0/0	t0023	4167	1	0	0	1	0	0	copy fasta	STK17B	chr2	196128583	196176578
STK17B_chr2_196128583_196176578	0/0	t0024	4155	1	1	0	0	0	0	copy fasta	STK17B	chr2	196128583	196176578
STK17B_chr2_196128583_196176578	0/0	t0025	4155	1	0	1	0	0	0	copy fasta	STK17B	chr2	196128583	196176578
STK17B_chr2_196128583_196176578	1/0	t0026	4155	1	0	0	0	0	0	copy fasta	STK17B	chr2	196128583	196176578
STK17B_chr2_196128583_196176578	0/0	t0027	4157	1	1	0	0	0	0	copy fasta	STK17B	chr2	196128583	196176578
STK17B_chr2_196128583_196176578	0/0	t0028	4155	1	0	1	0	0	0	copy fasta	STK17B	chr2	196128583	196176578
STK17B_chr2_196128583_196176578	0/0	t0029	4166	1	1	0	0	0	0	copy fasta	STK17B	chr2	196128583	196176578
STK17B_chr2_196128583_196176578	0/0	t0030	4167	1	0	0	1	0	0	copy fasta	STK17B	chr2	196128583	196176578
STK17B_chr2_196128583_196176578	0/0	t0031	4168	1	0	1	0	0	0	copy fasta	STK17B	chr2	196128583	196176578
STK17B_chr2_196128583_196176578	0/0	t0032	4158	1	0	0	0	1	0	copy fasta	STK17B	chr2	196128583	196176578
STK17B_chr2_196128583_196176578	0/0	t0033	4166	1	1	0	0	0	0	copy fasta	STK17B	chr2	196128583	196176578
STK17B_chr2_196128583_196176578	0/0	t0034	4156	1	1	0	0	0	0	copy fasta	STK17B	chr2	196128583	196176578
STK17B_chr2_196128583_196176578	0/0	t0035	4151	1	0	0	0	0	1	copy fasta	STK17B	chr2	196128583	196176578
STK17B_chr2_196128583_196176578	0/0	t0036	4162	1	1	0	0	0	0	copy fasta	STK17B	chr2	196128583	196176578
STK17B_chr2_196128583_196176578	0/0	t0037	4159	1	1	0	0	0	0	copy fasta	STK17B	chr2	196128583	196176578
STK17B_chr2_196128583_196176578	0/0	t0038	4161	1	0	0	1	0	0	copy fasta	STK17B	chr2	196128583	196176578
STK17B_chr2_196128583_196176578	0/0	t0039	4155	1	1	0	0	0	0	copy fasta	STK17B	chr2	196128583	196176578
STK17B_chr2_196128583_196176578	0/0	t0040	4156	1	1	0	0	0	0	copy fasta	STK17B	chr2	196128583	196176578
STK17B_chr2_196128583_196176578	0/0	t0041	4155	1	0	0	1	0	0	copy fasta	STK17B	chr2	196128583	196176578
STK17B_chr2_196128583_196176578	0/0	t0042	4155	1	0	0	1	0	0	copy fasta	STK17B	chr2	196128583	196176578
STK17B_chr2_196128583_196176578	0/0	t0043	4155	1	0	0	0	0	1	copy fasta	STK17B	chr2	196128583	196176578
STK17B_chr2_196128583_196176578	0/0	t0044	4156	1	0	0	1	0	0	copy fasta	STK17B	chr2	196128583	196176578