JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
STK17B_chr2_196128583_196176578	0/0	t0045	4156	1	0	0	1	0	0	copy fasta	STK17B	chr2	196128583	196176578
STK17B_chr2_196128583_196176578	0/0	t0046	4169	1	0	0	1	0	0	copy fasta	STK17B	chr2	196128583	196176578
STK17B_chr2_196128583_196176578	0/0	t0047	4155	1	0	0	0	0	1	copy fasta	STK17B	chr2	196128583	196176578
STK19_chr6_31967363_31986446	0/1	t0001	447	420	93	70	196	18	42	copy fasta	STK19	chr6	31967363	31986446
STK19_chr6_31967363_31986446	0/0	t0002	447	13	1	0	12	0	0	copy fasta	STK19	chr6	31967363	31986446
STK24_chr13_98440185_98582107	0/0	t0001	8310	53	9	9	23	2	10	copy fasta	STK24	chr13	98440185	98582107
STK24_chr13_98440185_98582107	0/0	t0002	8316	51	2	12	27	3	7	copy fasta	STK24	chr13	98440185	98582107
STK24_chr13_98440185_98582107	0/0	t0003	8304	23	0	7	11	2	3	copy fasta	STK24	chr13	98440185	98582107
STK24_chr13_98440185_98582107	0/0	t0004	8311	14	0	0	13	0	1	copy fasta	STK24	chr13	98440185	98582107
STK24_chr13_98440185_98582107	0/0	t0005	8306	13	0	3	7	1	2	copy fasta	STK24	chr13	98440185	98582107
STK24_chr13_98440185_98582107	0/0	t0006	8300	9	0	1	8	0	0	copy fasta	STK24	chr13	98440185	98582107
STK24_chr13_98440185_98582107	0/0	t0007	8312	8	3	4	0	0	1	copy fasta	STK24	chr13	98440185	98582107
STK24_chr13_98440185_98582107	0/0	t0008	8306	6	0	3	2	0	1	copy fasta	STK24	chr13	98440185	98582107
STK24_chr13_98440185_98582107	0/0	t0009	8300	6	0	1	1	2	2	copy fasta	STK24	chr13	98440185	98582107
STK24_chr13_98440185_98582107	0/0	t0010	8302	6	5	1	0	0	0	copy fasta	STK24	chr13	98440185	98582107
STK24_chr13_98440185_98582107	0/0	t0011	8312	4	4	0	0	0	0	copy fasta	STK24	chr13	98440185	98582107
STK24_chr13_98440185_98582107	0/0	t0012	8310	4	4	0	0	0	0	copy fasta	STK24	chr13	98440185	98582107
STK24_chr13_98440185_98582107	0/0	t0013	8310	4	0	4	0	0	0	copy fasta	STK24	chr13	98440185	98582107
STK24_chr13_98440185_98582107	0/0	t0014	8311	4	0	4	0	0	0	copy fasta	STK24	chr13	98440185	98582107
STK24_chr13_98440185_98582107	0/0	t0015	8306	4	4	0	0	0	0	copy fasta	STK24	chr13	98440185	98582107
STK24_chr13_98440185_98582107	0/0	t0016	8309	3	3	0	0	0	0	copy fasta	STK24	chr13	98440185	98582107
STK24_chr13_98440185_98582107	1/0	t0017	8310	3	2	0	0	0	0	copy fasta	STK24	chr13	98440185	98582107
STK24_chr13_98440185_98582107	0/0	t0018	8298	3	0	0	3	0	0	copy fasta	STK24	chr13	98440185	98582107
STK24_chr13_98440185_98582107	0/0	t0019	8300	3	3	0	0	0	0	copy fasta	STK24	chr13	98440185	98582107
STK24_chr13_98440185_98582107	0/0	t0020	8316	2	0	0	2	0	0	copy fasta	STK24	chr13	98440185	98582107
STK24_chr13_98440185_98582107	0/0	t0021	8310	2	2	0	0	0	0	copy fasta	STK24	chr13	98440185	98582107
STK24_chr13_98440185_98582107	0/1	t0022	8320	2	0	1	0	0	0	copy fasta	STK24	chr13	98440185	98582107
STK24_chr13_98440185_98582107	0/0	t0023	8316	2	0	2	0	0	0	copy fasta	STK24	chr13	98440185	98582107
STK24_chr13_98440185_98582107	0/0	t0024	8310	2	0	0	2	0	0	copy fasta	STK24	chr13	98440185	98582107
STK24_chr13_98440185_98582107	0/0	t0025	8310	2	2	0	0	0	0	copy fasta	STK24	chr13	98440185	98582107
STK24_chr13_98440185_98582107	0/0	t0026	8315	2	1	1	0	0	0	copy fasta	STK24	chr13	98440185	98582107
STK24_chr13_98440185_98582107	0/0	t0027	8311	2	1	1	0	0	0	copy fasta	STK24	chr13	98440185	98582107
STK24_chr13_98440185_98582107	0/0	t0028	8310	2	0	0	2	0	0	copy fasta	STK24	chr13	98440185	98582107
STK24_chr13_98440185_98582107	0/0	t0029	8313	2	0	0	2	0	0	copy fasta	STK24	chr13	98440185	98582107
STK24_chr13_98440185_98582107	0/0	t0030	8311	2	2	0	0	0	0	copy fasta	STK24	chr13	98440185	98582107
STK24_chr13_98440185_98582107	0/0	t0031	8311	2	1	1	0	0	0	copy fasta	STK24	chr13	98440185	98582107
STK24_chr13_98440185_98582107	0/0	t0032	8299	2	0	0	0	0	2	copy fasta	STK24	chr13	98440185	98582107
STK24_chr13_98440185_98582107	0/0	t0033	8304	2	0	0	0	2	0	copy fasta	STK24	chr13	98440185	98582107
STK24_chr13_98440185_98582107	0/0	t0034	8311	2	0	0	0	2	0	copy fasta	STK24	chr13	98440185	98582107
STK24_chr13_98440185_98582107	0/0	t0035	8306	2	0	0	2	0	0	copy fasta	STK24	chr13	98440185	98582107
STK24_chr13_98440185_98582107	0/0	t0036	8311	2	1	0	1	0	0	copy fasta	STK24	chr13	98440185	98582107
STK24_chr13_98440185_98582107	0/0	t0037	8300	2	0	2	0	0	0	copy fasta	STK24	chr13	98440185	98582107
STK24_chr13_98440185_98582107	0/0	t0038	8311	1	1	0	0	0	0	copy fasta	STK24	chr13	98440185	98582107
STK24_chr13_98440185_98582107	0/0	t0039	8316	1	0	0	1	0	0	copy fasta	STK24	chr13	98440185	98582107
STK24_chr13_98440185_98582107	0/0	t0040	8316	1	0	0	1	0	0	copy fasta	STK24	chr13	98440185	98582107
STK24_chr13_98440185_98582107	0/0	t0041	8307	1	1	0	0	0	0	copy fasta	STK24	chr13	98440185	98582107
STK24_chr13_98440185_98582107	0/0	t0042	8390	1	1	0	0	0	0	copy fasta	STK24	chr13	98440185	98582107
STK24_chr13_98440185_98582107	0/0	t0043	8310	1	0	1	0	0	0	copy fasta	STK24	chr13	98440185	98582107
STK24_chr13_98440185_98582107	0/0	t0044	8311	1	0	0	1	0	0	copy fasta	STK24	chr13	98440185	98582107
STK24_chr13_98440185_98582107	0/0	t0045	8311	1	1	0	0	0	0	copy fasta	STK24	chr13	98440185	98582107