JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
STK24_chr13_98440185_98582107	0/0	t0046	8311	1	1	0	0	0	0	copy fasta	STK24	chr13	98440185	98582107
STK24_chr13_98440185_98582107	0/0	t0047	8311	1	1	0	0	0	0	copy fasta	STK24	chr13	98440185	98582107
STK24_chr13_98440185_98582107	0/0	t0048	8311	1	1	0	0	0	0	copy fasta	STK24	chr13	98440185	98582107
STK24_chr13_98440185_98582107	0/0	t0049	8310	1	1	0	0	0	0	copy fasta	STK24	chr13	98440185	98582107
STK24_chr13_98440185_98582107	0/0	t0050	8313	1	0	0	1	0	0	copy fasta	STK24	chr13	98440185	98582107
STK24_chr13_98440185_98582107	0/0	t0051	8310	1	0	0	1	0	0	copy fasta	STK24	chr13	98440185	98582107
STK24_chr13_98440185_98582107	0/0	t0052	8326	1	0	0	1	0	0	copy fasta	STK24	chr13	98440185	98582107
STK24_chr13_98440185_98582107	0/0	t0053	8316	1	0	0	1	0	0	copy fasta	STK24	chr13	98440185	98582107
STK24_chr13_98440185_98582107	0/0	t0054	8310	1	0	0	1	0	0	copy fasta	STK24	chr13	98440185	98582107
STK24_chr13_98440185_98582107	0/0	t0055	8310	1	0	0	1	0	0	copy fasta	STK24	chr13	98440185	98582107
STK24_chr13_98440185_98582107	0/0	t0056	8306	1	0	0	1	0	0	copy fasta	STK24	chr13	98440185	98582107
STK24_chr13_98440185_98582107	0/0	t0057	8306	1	0	0	1	0	0	copy fasta	STK24	chr13	98440185	98582107
STK24_chr13_98440185_98582107	0/0	t0058	8311	1	0	0	0	0	1	copy fasta	STK24	chr13	98440185	98582107
STK24_chr13_98440185_98582107	0/0	t0059	8311	1	0	0	0	0	1	copy fasta	STK24	chr13	98440185	98582107
STK24_chr13_98440185_98582107	0/0	t0060	8311	1	0	0	1	0	0	copy fasta	STK24	chr13	98440185	98582107
STK24_chr13_98440185_98582107	0/0	t0061	8311	1	0	0	0	0	1	copy fasta	STK24	chr13	98440185	98582107
STK24_chr13_98440185_98582107	0/0	t0062	8312	1	0	1	0	0	0	copy fasta	STK24	chr13	98440185	98582107
STK24_chr13_98440185_98582107	0/0	t0063	8308	1	1	0	0	0	0	copy fasta	STK24	chr13	98440185	98582107
STK24_chr13_98440185_98582107	0/0	t0064	8306	1	1	0	0	0	0	copy fasta	STK24	chr13	98440185	98582107
STK24_chr13_98440185_98582107	0/0	t0065	8307	1	1	0	0	0	0	copy fasta	STK24	chr13	98440185	98582107
STK24_chr13_98440185_98582107	0/0	t0066	8306	1	1	0	0	0	0	copy fasta	STK24	chr13	98440185	98582107
STK24_chr13_98440185_98582107	0/0	t0067	8316	1	0	0	1	0	0	copy fasta	STK24	chr13	98440185	98582107
STK24_chr13_98440185_98582107	0/0	t0068	8310	1	0	0	0	1	0	copy fasta	STK24	chr13	98440185	98582107
STK24_chr13_98440185_98582107	0/0	t0069	8304	1	0	0	0	0	1	copy fasta	STK24	chr13	98440185	98582107
STK24_chr13_98440185_98582107	0/0	t0070	8301	1	0	1	0	0	0	copy fasta	STK24	chr13	98440185	98582107
STK24_chr13_98440185_98582107	0/0	t0071	8301	1	1	0	0	0	0	copy fasta	STK24	chr13	98440185	98582107
STK24_chr13_98440185_98582107	0/0	t0072	8297	1	1	0	0	0	0	copy fasta	STK24	chr13	98440185	98582107
STK24_chr13_98440185_98582107	0/0	t0073	8300	1	1	0	0	0	0	copy fasta	STK24	chr13	98440185	98582107
STK24_chr13_98440185_98582107	0/0	t0074	8300	1	1	0	0	0	0	copy fasta	STK24	chr13	98440185	98582107
STK24_chr13_98440185_98582107	0/0	t0075	8304	1	0	1	0	0	0	copy fasta	STK24	chr13	98440185	98582107
STK24_chr13_98440185_98582107	0/0	t0076	8305	1	1	0	0	0	0	copy fasta	STK24	chr13	98440185	98582107
STK24_chr13_98440185_98582107	0/0	t0077	8300	1	0	0	0	0	1	copy fasta	STK24	chr13	98440185	98582107
STK24_chr13_98440185_98582107	0/0	t0078	8304	1	0	1	0	0	0	copy fasta	STK24	chr13	98440185	98582107
STK24_chr13_98440185_98582107	0/0	t0079	8304	1	0	0	0	0	1	copy fasta	STK24	chr13	98440185	98582107
STK24_chr13_98440185_98582107	0/0	t0080	8300	1	0	0	1	0	0	copy fasta	STK24	chr13	98440185	98582107
STK24_chr13_98440185_98582107	0/0	t0081	8301	1	0	1	0	0	0	copy fasta	STK24	chr13	98440185	98582107
STK24_chr13_98440185_98582107	0/0	t0082	8302	1	1	0	0	0	0	copy fasta	STK24	chr13	98440185	98582107
STK24_chr13_98440185_98582107	0/0	t0083	8304	1	0	0	1	0	0	copy fasta	STK24	chr13	98440185	98582107
STK24_chr13_98440185_98582107	0/0	t0084	8316	1	0	0	0	0	1	copy fasta	STK24	chr13	98440185	98582107
STK24_chr13_98440185_98582107	0/0	t0085	8310	1	1	0	0	0	0	copy fasta	STK24	chr13	98440185	98582107
STK24_chr13_98440185_98582107	0/0	t0086	8310	1	0	0	0	1	0	copy fasta	STK24	chr13	98440185	98582107
STK24_chr13_98440185_98582107	0/0	t0087	8315	1	0	1	0	0	0	copy fasta	STK24	chr13	98440185	98582107
STK24_chr13_98440185_98582107	0/0	t0088	8309	1	1	0	0	0	0	copy fasta	STK24	chr13	98440185	98582107
STK24_chr13_98440185_98582107	0/0	t0089	8310	1	1	0	0	0	0	copy fasta	STK24	chr13	98440185	98582107
STK24_chr13_98440185_98582107	0/0	t0090	8311	1	1	0	0	0	0	copy fasta	STK24	chr13	98440185	98582107
STK24_chr13_98440185_98582107	0/0	t0091	8306	1	0	0	1	0	0	copy fasta	STK24	chr13	98440185	98582107
STK24_chr13_98440185_98582107	0/0	t0092	8311	1	1	0	0	0	0	copy fasta	STK24	chr13	98440185	98582107
STK24_chr13_98440185_98582107	0/0	t0093	8310	1	0	0	0	0	1	copy fasta	STK24	chr13	98440185	98582107
STK24_chr13_98440185_98582107	0/0	t0094	8311	1	1	0	0	0	0	copy fasta	STK24	chr13	98440185	98582107
STK24_chr13_98440185_98582107	0/0	t0095	8311	1	1	0	0	0	0	copy fasta	STK24	chr13	98440185	98582107