JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
STK24_chr13_98440185_98582107	0/0	t0096	8311	1	1	0	0	0	0	copy fasta	STK24	chr13	98440185	98582107
STK24_chr13_98440185_98582107	0/0	t0097	8311	1	0	0	0	0	1	copy fasta	STK24	chr13	98440185	98582107
STK24_chr13_98440185_98582107	0/0	t0098	8306	1	1	0	0	0	0	copy fasta	STK24	chr13	98440185	98582107
STK24_chr13_98440185_98582107	0/0	t0099	8304	1	1	0	0	0	0	copy fasta	STK24	chr13	98440185	98582107
STK24_chr13_98440185_98582107	0/0	t0100	8308	1	1	0	0	0	0	copy fasta	STK24	chr13	98440185	98582107
STK24_chr13_98440185_98582107	0/0	t0101	8310	1	1	0	0	0	0	copy fasta	STK24	chr13	98440185	98582107
STK24_chr13_98440185_98582107	0/0	t0102	8304	1	1	0	0	0	0	copy fasta	STK24	chr13	98440185	98582107
STK25_chr2_241487670_241513584	0/0	t0001	3235	116	33	11	63	3	6	copy fasta	STK25	chr2	241487670	241513584
STK25_chr2_241487670_241513584	0/0	t0002	3236	94	10	8	66	2	8	copy fasta	STK25	chr2	241487670	241513584
STK25_chr2_241487670_241513584	1/0	t0003	3235	56	18	8	16	2	11	copy fasta	STK25	chr2	241487670	241513584
STK25_chr2_241487670_241513584	0/0	t0004	3234	37	0	16	21	0	0	copy fasta	STK25	chr2	241487670	241513584
STK25_chr2_241487670_241513584	0/0	t0005	3234	28	8	15	0	3	2	copy fasta	STK25	chr2	241487670	241513584
STK25_chr2_241487670_241513584	0/0	t0006	3234	26	1	2	18	0	5	copy fasta	STK25	chr2	241487670	241513584
STK25_chr2_241487670_241513584	0/0	t0007	3234	13	0	1	8	0	4	copy fasta	STK25	chr2	241487670	241513584
STK25_chr2_241487670_241513584	0/0	t0008	3237	9	1	1	6	0	1	copy fasta	STK25	chr2	241487670	241513584
STK25_chr2_241487670_241513584	0/0	t0009	3235	8	8	0	0	0	0	copy fasta	STK25	chr2	241487670	241513584
STK25_chr2_241487670_241513584	0/1	t0010	3235	5	0	1	0	1	2	copy fasta	STK25	chr2	241487670	241513584
STK25_chr2_241487670_241513584	0/0	t0011	3236	5	0	0	3	0	2	copy fasta	STK25	chr2	241487670	241513584
STK25_chr2_241487670_241513584	0/0	t0012	3239	4	0	0	0	0	4	copy fasta	STK25	chr2	241487670	241513584
STK25_chr2_241487670_241513584	0/0	t0013	3236	4	0	4	0	0	0	copy fasta	STK25	chr2	241487670	241513584
STK25_chr2_241487670_241513584	0/0	t0014	3234	3	0	3	0	0	0	copy fasta	STK25	chr2	241487670	241513584
STK25_chr2_241487670_241513584	0/0	t0015	3235	2	1	1	0	0	0	copy fasta	STK25	chr2	241487670	241513584
STK25_chr2_241487670_241513584	0/0	t0016	3235	2	1	0	1	0	0	copy fasta	STK25	chr2	241487670	241513584
STK25_chr2_241487670_241513584	0/0	t0017	3236	2	0	0	0	2	0	copy fasta	STK25	chr2	241487670	241513584
STK25_chr2_241487670_241513584	0/0	t0018	3235	2	0	1	0	1	0	copy fasta	STK25	chr2	241487670	241513584
STK25_chr2_241487670_241513584	0/0	t0019	3234	2	2	0	0	0	0	copy fasta	STK25	chr2	241487670	241513584
STK25_chr2_241487670_241513584	0/0	t0020	3235	1	0	1	0	0	0	copy fasta	STK25	chr2	241487670	241513584
STK25_chr2_241487670_241513584	0/0	t0021	3236	1	1	0	0	0	0	copy fasta	STK25	chr2	241487670	241513584
STK25_chr2_241487670_241513584	0/0	t0022	3234	1	0	0	1	0	0	copy fasta	STK25	chr2	241487670	241513584
STK25_chr2_241487670_241513584	0/0	t0023	3236	1	0	0	1	0	0	copy fasta	STK25	chr2	241487670	241513584
STK25_chr2_241487670_241513584	0/0	t0024	3234	1	0	0	1	0	0	copy fasta	STK25	chr2	241487670	241513584
STK25_chr2_241487670_241513584	0/0	t0025	3235	1	1	0	0	0	0	copy fasta	STK25	chr2	241487670	241513584
STK25_chr2_241487670_241513584	0/0	t0026	3235	1	0	0	1	0	0	copy fasta	STK25	chr2	241487670	241513584
STK25_chr2_241487670_241513584	0/0	t0027	3235	1	0	0	1	0	0	copy fasta	STK25	chr2	241487670	241513584
STK25_chr2_241487670_241513584	0/0	t0028	3236	1	0	0	1	0	0	copy fasta	STK25	chr2	241487670	241513584
STK25_chr2_241487670_241513584	0/0	t0029	3236	1	0	0	1	0	0	copy fasta	STK25	chr2	241487670	241513584
STK25_chr2_241487670_241513584	0/0	t0030	3235	1	0	0	1	0	0	copy fasta	STK25	chr2	241487670	241513584
STK25_chr2_241487670_241513584	0/0	t0031	3235	1	1	0	0	0	0	copy fasta	STK25	chr2	241487670	241513584
STK25_chr2_241487670_241513584	0/0	t0032	3236	1	1	0	0	0	0	copy fasta	STK25	chr2	241487670	241513584
STK25_chr2_241487670_241513584	0/0	t0033	3235	1	1	0	0	0	0	copy fasta	STK25	chr2	241487670	241513584
STK25_chr2_241487670_241513584	0/0	t0034	3235	1	1	0	0	0	0	copy fasta	STK25	chr2	241487670	241513584
STK25_chr2_241487670_241513584	0/0	t0035	3235	1	0	0	0	0	1	copy fasta	STK25	chr2	241487670	241513584
STK25_chr2_241487670_241513584	0/0	t0036	3236	1	0	0	0	1	0	copy fasta	STK25	chr2	241487670	241513584
STK25_chr2_241487670_241513584	0/0	t0037	3235	1	0	0	0	0	1	copy fasta	STK25	chr2	241487670	241513584
STK25_chr2_241487670_241513584	0/0	t0038	3234	1	1	0	0	0	0	copy fasta	STK25	chr2	241487670	241513584
STK25_chr2_241487670_241513584	0/0	t0039	3235	1	0	1	0	0	0	copy fasta	STK25	chr2	241487670	241513584
STK25_chr2_241487670_241513584	0/0	t0040	3235	1	0	0	1	0	0	copy fasta	STK25	chr2	241487670	241513584
STK25_chr2_241487670_241513584	0/0	t0041	3235	1	0	1	0	0	0	copy fasta	STK25	chr2	241487670	241513584
STK25_chr2_241487670_241513584	0/0	t0042	3235	1	0	0	0	1	0	copy fasta	STK25	chr2	241487670	241513584
STK25_chr2_241487670_241513584	0/0	t0043	3235	1	0	0	0	0	1	copy fasta	STK25	chr2	241487670	241513584