JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
STK25_chr2_241487670_241513584	0/0	t0044	3236	1	0	0	1	0	0	copy fasta	STK25	chr2	241487670	241513584
STK25_chr2_241487670_241513584	0/0	t0045	3235	1	0	1	0	0	0	copy fasta	STK25	chr2	241487670	241513584
STK25_chr2_241487670_241513584	0/0	t0046	3236	1	1	0	0	0	0	copy fasta	STK25	chr2	241487670	241513584
STK25_chr2_241487670_241513584	0/0	t0047	3236	1	1	0	0	0	0	copy fasta	STK25	chr2	241487670	241513584
STK26_chrX_132018302_132080943	0/1	t0001	2001	177	33	33	84	7	19	copy fasta	STK26	chrX	132018302	132080943
STK26_chrX_132018302_132080943	1/0	t0002	2001	38	19	4	12	0	2	copy fasta	STK26	chrX	132018302	132080943
STK26_chrX_132018302_132080943	0/0	t0003	2001	13	3	1	0	4	5	copy fasta	STK26	chrX	132018302	132080943
STK26_chrX_132018302_132080943	0/0	t0004	2001	5	5	0	0	0	0	copy fasta	STK26	chrX	132018302	132080943
STK26_chrX_132018302_132080943	0/0	t0005	2001	4	4	0	0	0	0	copy fasta	STK26	chrX	132018302	132080943
STK26_chrX_132018302_132080943	0/0	t0006	2001	2	0	0	0	0	2	copy fasta	STK26	chrX	132018302	132080943
STK26_chrX_132018302_132080943	0/0	t0007	2000	2	1	0	1	0	0	copy fasta	STK26	chrX	132018302	132080943
STK26_chrX_132018302_132080943	0/0	t0008	2002	2	0	0	2	0	0	copy fasta	STK26	chrX	132018302	132080943
STK26_chrX_132018302_132080943	0/0	t0009	2000	1	1	0	0	0	0	copy fasta	STK26	chrX	132018302	132080943
STK31_chr7_23705219_23837513	0/1	t0001	219	306	78	59	126	12	30	copy fasta	STK31	chr7	23705219	23837513
STK31_chr7_23705219_23837513	1/0	t0002	215	88	11	17	45	4	10	copy fasta	STK31	chr7	23705219	23837513
STK31_chr7_23705219_23837513	0/0	t0003	213	6	0	0	6	0	0	copy fasta	STK31	chr7	23705219	23837513
STK31_chr7_23705219_23837513	0/0	t0004	209	2	0	0	0	0	2	copy fasta	STK31	chr7	23705219	23837513
STK31_chr7_23705219_23837513	0/0	t0005	219	1	0	0	1	0	0	copy fasta	STK31	chr7	23705219	23837513
STK31_chr7_23705219_23837513	0/0	t0006	219	1	1	0	0	0	0	copy fasta	STK31	chr7	23705219	23837513
STK32A_chr5_147230026_147392855	0/0	t0001	4143	109	28	15	55	2	9	copy fasta	STK32A	chr5	147230026	147392855
STK32A_chr5_147230026_147392855	1/1	t0002	4143	88	26	19	17	5	19	copy fasta	STK32A	chr5	147230026	147392855
STK32A_chr5_147230026_147392855	0/0	t0003	4143	31	0	1	30	0	0	copy fasta	STK32A	chr5	147230026	147392855
STK32A_chr5_147230026_147392855	0/0	t0004	4143	23	2	12	1	2	6	copy fasta	STK32A	chr5	147230026	147392855
STK32A_chr5_147230026_147392855	0/0	t0005	4143	10	0	0	10	0	0	copy fasta	STK32A	chr5	147230026	147392855
STK32A_chr5_147230026_147392855	0/0	t0006	4143	9	9	0	0	0	0	copy fasta	STK32A	chr5	147230026	147392855
STK32A_chr5_147230026_147392855	0/0	t0007	4143	5	4	1	0	0	0	copy fasta	STK32A	chr5	147230026	147392855
STK32A_chr5_147230026_147392855	0/0	t0008	4143	5	1	2	0	1	1	copy fasta	STK32A	chr5	147230026	147392855
STK32A_chr5_147230026_147392855	0/0	t0009	4143	4	4	0	0	0	0	copy fasta	STK32A	chr5	147230026	147392855
STK32A_chr5_147230026_147392855	0/0	t0010	4143	4	0	0	4	0	0	copy fasta	STK32A	chr5	147230026	147392855
STK32A_chr5_147230026_147392855	0/0	t0011	4143	3	3	0	0	0	0	copy fasta	STK32A	chr5	147230026	147392855
STK32A_chr5_147230026_147392855	0/0	t0012	4143	2	2	0	0	0	0	copy fasta	STK32A	chr5	147230026	147392855
STK32A_chr5_147230026_147392855	0/0	t0013	4143	2	2	0	0	0	0	copy fasta	STK32A	chr5	147230026	147392855
STK32A_chr5_147230026_147392855	0/0	t0014	4143	2	0	2	0	0	0	copy fasta	STK32A	chr5	147230026	147392855
STK32A_chr5_147230026_147392855	0/0	t0015	4143	2	2	0	0	0	0	copy fasta	STK32A	chr5	147230026	147392855
STK32A_chr5_147230026_147392855	0/0	t0016	4143	1	1	0	0	0	0	copy fasta	STK32A	chr5	147230026	147392855
STK32A_chr5_147230026_147392855	0/0	t0017	4143	1	1	0	0	0	0	copy fasta	STK32A	chr5	147230026	147392855
STK32A_chr5_147230026_147392855	0/0	t0018	4143	1	0	0	1	0	0	copy fasta	STK32A	chr5	147230026	147392855
STK32A_chr5_147230026_147392855	0/0	t0019	4143	1	0	1	0	0	0	copy fasta	STK32A	chr5	147230026	147392855
STK32A_chr5_147230026_147392855	0/0	t0020	4143	1	0	0	1	0	0	copy fasta	STK32A	chr5	147230026	147392855
STK32A_chr5_147230026_147392855	0/0	t0021	4143	1	0	0	1	0	0	copy fasta	STK32A	chr5	147230026	147392855
STK32A_chr5_147230026_147392855	0/0	t0022	4143	1	1	0	0	0	0	copy fasta	STK32A	chr5	147230026	147392855
STK32A_chr5_147230026_147392855	0/0	t0023	4143	1	0	0	1	0	0	copy fasta	STK32A	chr5	147230026	147392855
STK32A_chr5_147230026_147392855	0/0	t0024	4143	1	0	0	0	0	1	copy fasta	STK32A	chr5	147230026	147392855
STK32A_chr5_147230026_147392855	0/0	t0025	4143	1	0	0	0	0	1	copy fasta	STK32A	chr5	147230026	147392855
STK32A_chr5_147230026_147392855	0/0	t0026	4143	1	0	0	1	0	0	copy fasta	STK32A	chr5	147230026	147392855
STK32A_chr5_147230026_147392855	0/0	t0027	4143	1	0	1	0	0	0	copy fasta	STK32A	chr5	147230026	147392855
STK32A_chr5_147230026_147392855	0/0	t0028	4143	1	0	0	0	0	1	copy fasta	STK32A	chr5	147230026	147392855
STK32A_chr5_147230026_147392855	0/0	t0029	4143	1	1	0	0	0	0	copy fasta	STK32A	chr5	147230026	147392855
STK32A_chr5_147230026_147392855	0/0	t0030	4143	1	1	0	0	0	0	copy fasta	STK32A	chr5	147230026	147392855
STK32A_chr5_147230026_147392855	0/0	t0031	4143	1	1	0	0	0	0	copy fasta	STK32A	chr5	147230026	147392855