JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
STK32A_chr5_147230026_147392855	0/0	t0032	4143	1	1	0	0	0	0	copy fasta	STK32A	chr5	147230026	147392855
STK32B_chr4_5046480_5505989	0/1	t0001	2294	91	30	26	20	6	8	copy fasta	STK32B	chr4	5046480	5505989
STK32B_chr4_5046480_5505989	0/0	t0002	2298	21	13	8	0	0	0	copy fasta	STK32B	chr4	5046480	5505989
STK32B_chr4_5046480_5505989	0/0	t0003	2291	17	0	2	15	0	0	copy fasta	STK32B	chr4	5046480	5505989
STK32B_chr4_5046480_5505989	0/0	t0004	2298	9	0	1	7	0	1	copy fasta	STK32B	chr4	5046480	5505989
STK32B_chr4_5046480_5505989	0/0	t0005	2294	6	5	1	0	0	0	copy fasta	STK32B	chr4	5046480	5505989
STK32B_chr4_5046480_5505989	0/0	t0006	2298	3	3	0	0	0	0	copy fasta	STK32B	chr4	5046480	5505989
STK32B_chr4_5046480_5505989	0/0	t0007	2294	3	3	0	0	0	0	copy fasta	STK32B	chr4	5046480	5505989
STK32B_chr4_5046480_5505989	0/0	t0008	2294	2	2	0	0	0	0	copy fasta	STK32B	chr4	5046480	5505989
STK32B_chr4_5046480_5505989	0/0	t0009	2294	2	2	0	0	0	0	copy fasta	STK32B	chr4	5046480	5505989
STK32B_chr4_5046480_5505989	0/0	t0010	2294	2	2	0	0	0	0	copy fasta	STK32B	chr4	5046480	5505989
STK32B_chr4_5046480_5505989	1/0	t0011	2291	1	0	0	0	0	0	copy fasta	STK32B	chr4	5046480	5505989
STK32B_chr4_5046480_5505989	0/0	t0012	2294	1	1	0	0	0	0	copy fasta	STK32B	chr4	5046480	5505989
STK32B_chr4_5046480_5505989	0/0	t0013	2294	1	0	0	1	0	0	copy fasta	STK32B	chr4	5046480	5505989
STK32B_chr4_5046480_5505989	0/0	t0014	2298	1	1	0	0	0	0	copy fasta	STK32B	chr4	5046480	5505989
STK32B_chr4_5046480_5505989	0/0	t0015	2298	1	0	1	0	0	0	copy fasta	STK32B	chr4	5046480	5505989
STK32B_chr4_5046480_5505989	0/0	t0016	2290	1	1	0	0	0	0	copy fasta	STK32B	chr4	5046480	5505989
STK32B_chr4_5046480_5505989	0/0	t0017	2294	1	1	0	0	0	0	copy fasta	STK32B	chr4	5046480	5505989
STK32B_chr4_5046480_5505989	0/0	t0018	2294	1	1	0	0	0	0	copy fasta	STK32B	chr4	5046480	5505989
STK32B_chr4_5046480_5505989	0/0	t0019	2294	1	1	0	0	0	0	copy fasta	STK32B	chr4	5046480	5505989
STK32B_chr4_5046480_5505989	0/0	t0020	2290	1	1	0	0	0	0	copy fasta	STK32B	chr4	5046480	5505989
STK32B_chr4_5046480_5505989	0/0	t0021	2294	1	1	0	0	0	0	copy fasta	STK32B	chr4	5046480	5505989
STK32B_chr4_5046480_5505989	0/0	t0022	2294	1	0	1	0	0	0	copy fasta	STK32B	chr4	5046480	5505989
STK32B_chr4_5046480_5505989	0/0	t0023	2298	1	0	0	0	0	1	copy fasta	STK32B	chr4	5046480	5505989
STK32B_chr4_5046480_5505989	0/0	t0024	2294	1	0	0	1	0	0	copy fasta	STK32B	chr4	5046480	5505989
STK32C_chr10_132202492_132312950	0/1	t0001	638	207	48	39	85	10	24	copy fasta	STK32C	chr10	132202492	132312950
STK32C_chr10_132202492_132312950	0/0	t0002	638	64	19	3	37	1	4	copy fasta	STK32C	chr10	132202492	132312950
STK32C_chr10_132202492_132312950	1/0	t0003	636	39	15	9	8	2	4	copy fasta	STK32C	chr10	132202492	132312950
STK32C_chr10_132202492_132312950	0/0	t0004	638	19	0	8	0	3	8	copy fasta	STK32C	chr10	132202492	132312950
STK32C_chr10_132202492_132312950	0/0	t0005	638	13	3	4	2	0	4	copy fasta	STK32C	chr10	132202492	132312950
STK32C_chr10_132202492_132312950	0/0	t0006	638	4	0	0	0	0	4	copy fasta	STK32C	chr10	132202492	132312950
STK32C_chr10_132202492_132312950	0/0	t0007	638	3	3	0	0	0	0	copy fasta	STK32C	chr10	132202492	132312950
STK32C_chr10_132202492_132312950	0/0	t0008	638	3	0	0	3	0	0	copy fasta	STK32C	chr10	132202492	132312950
STK32C_chr10_132202492_132312950	0/0	t0009	638	3	1	0	1	0	1	copy fasta	STK32C	chr10	132202492	132312950
STK32C_chr10_132202492_132312950	0/0	t0010	638	2	2	0	0	0	0	copy fasta	STK32C	chr10	132202492	132312950
STK32C_chr10_132202492_132312950	0/0	t0011	638	2	2	0	0	0	0	copy fasta	STK32C	chr10	132202492	132312950
STK32C_chr10_132202492_132312950	0/0	t0012	638	1	1	0	0	0	0	copy fasta	STK32C	chr10	132202492	132312950
STK32C_chr10_132202492_132312950	0/0	t0013	638	1	1	0	0	0	0	copy fasta	STK32C	chr10	132202492	132312950
STK32C_chr10_132202492_132312950	0/0	t0014	630	1	0	0	1	0	0	copy fasta	STK32C	chr10	132202492	132312950
STK32C_chr10_132202492_132312950	0/0	t0015	638	1	0	0	1	0	0	copy fasta	STK32C	chr10	132202492	132312950
STK32C_chr10_132202492_132312950	0/0	t0016	638	1	1	0	0	0	0	copy fasta	STK32C	chr10	132202492	132312950
STK32C_chr10_132202492_132312950	0/0	t0017	638	1	1	0	0	0	0	copy fasta	STK32C	chr10	132202492	132312950
STK32C_chr10_132202492_132312950	0/0	t0018	638	1	0	1	0	0	0	copy fasta	STK32C	chr10	132202492	132312950
STK32C_chr10_132202492_132312950	0/0	t0019	638	1	1	0	0	0	0	copy fasta	STK32C	chr10	132202492	132312950
STK32C_chr10_132202492_132312950	0/0	t0020	636	1	0	0	0	0	1	copy fasta	STK32C	chr10	132202492	132312950
STK33_chr11_8386870_8599228	0/1	t0001	1252	107	10	15	61	5	15	copy fasta	STK33	chr11	8386870	8599228
STK33_chr11_8386870_8599228	0/0	t0002	1252	79	5	20	43	5	6	copy fasta	STK33	chr11	8386870	8599228
STK33_chr11_8386870_8599228	0/0	t0003	1252	30	15	4	7	0	4	copy fasta	STK33	chr11	8386870	8599228
STK33_chr11_8386870_8599228	0/0	t0004	1252	24	12	0	12	0	0	copy fasta	STK33	chr11	8386870	8599228
STK33_chr11_8386870_8599228	0/0	t0005	1252	21	10	2	8	0	1	copy fasta	STK33	chr11	8386870	8599228