Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
BMP4_chr14_53944736_53961825	0/0	t0006	704	11	0	3	5	0	3	copy fasta	BMP4	chr14	53944736	53961825
BMP4_chr14_53944736_53961825	0/0	t0007	706	10	4	3	3	0	0	copy fasta	BMP4	chr14	53944736	53961825
BMP4_chr14_53944736_53961825	0/0	t0008	704	6	0	1	4	0	1	copy fasta	BMP4	chr14	53944736	53961825
BMP4_chr14_53944736_53961825	0/0	t0009	705	4	3	1	0	0	0	copy fasta	BMP4	chr14	53944736	53961825
BMP4_chr14_53944736_53961825	0/0	t0010	709	3	0	0	3	0	0	copy fasta	BMP4	chr14	53944736	53961825
BMP4_chr14_53944736_53961825	0/0	t0011	705	1	1	0	0	0	0	copy fasta	BMP4	chr14	53944736	53961825
BMP4_chr14_53944736_53961825	0/0	t0012	708	1	1	0	0	0	0	copy fasta	BMP4	chr14	53944736	53961825
BMP4_chr14_53944736_53961825	0/0	t0013	705	1	0	0	0	0	1	copy fasta	BMP4	chr14	53944736	53961825
BMP4_chr14_53944736_53961825	0/0	t0014	705	1	1	0	0	0	0	copy fasta	BMP4	chr14	53944736	53961825
BMP4_chr14_53944736_53961825	0/0	t0015	705	1	0	0	1	0	0	copy fasta	BMP4	chr14	53944736	53961825
BMP5_chr6_55748653_55880590	0/0	t0001	2600	160	41	28	70	10	11	copy fasta	BMP5	chr6	55748653	55880590
BMP5_chr6_55748653_55880590	0/1	t0002	2604	32	10	5	10	2	4	copy fasta	BMP5	chr6	55748653	55880590
BMP5_chr6_55748653_55880590	1/0	t0003	2606	24	0	3	11	0	9	copy fasta	BMP5	chr6	55748653	55880590
BMP5_chr6_55748653_55880590	0/0	t0004	2604	21	0	4	10	0	7	copy fasta	BMP5	chr6	55748653	55880590
BMP5_chr6_55748653_55880590	0/0	t0005	2601	12	4	2	4	0	2	copy fasta	BMP5	chr6	55748653	55880590
BMP5_chr6_55748653_55880590	0/0	t0006	2604	11	7	3	0	0	1	copy fasta	BMP5	chr6	55748653	55880590
BMP5_chr6_55748653_55880590	0/0	t0007	2607	11	0	0	11	0	0	copy fasta	BMP5	chr6	55748653	55880590
BMP5_chr6_55748653_55880590	0/0	t0008	2604	6	6	0	0	0	0	copy fasta	BMP5	chr6	55748653	55880590
BMP5_chr6_55748653_55880590	0/0	t0009	2608	5	5	0	0	0	0	copy fasta	BMP5	chr6	55748653	55880590
BMP5_chr6_55748653_55880590	0/0	t0010	2606	4	1	2	0	0	1	copy fasta	BMP5	chr6	55748653	55880590
BMP5_chr6_55748653_55880590	0/0	t0011	2605	4	0	0	2	0	2	copy fasta	BMP5	chr6	55748653	55880590
BMP5_chr6_55748653_55880590	0/0	t0012	2600	3	3	0	0	0	0	copy fasta	BMP5	chr6	55748653	55880590
BMP5_chr6_55748653_55880590	0/0	t0013	2606	3	0	3	0	0	0	copy fasta	BMP5	chr6	55748653	55880590
BMP5_chr6_55748653_55880590	0/0	t0014	2604	2	2	0	0	0	0	copy fasta	BMP5	chr6	55748653	55880590
BMP5_chr6_55748653_55880590	0/0	t0015	2602	2	2	0	0	0	0	copy fasta	BMP5	chr6	55748653	55880590
BMP5_chr6_55748653_55880590	0/0	t0016	2601	2	2	0	0	0	0	copy fasta	BMP5	chr6	55748653	55880590
BMP5_chr6_55748653_55880590	0/0	t0017	2604	1	0	0	1	0	0	copy fasta	BMP5	chr6	55748653	55880590
BMP5_chr6_55748653_55880590	0/0	t0018	2604	1	0	0	1	0	0	copy fasta	BMP5	chr6	55748653	55880590
BMP5_chr6_55748653_55880590	0/0	t0019	2604	1	0	0	1	0	0	copy fasta	BMP5	chr6	55748653	55880590
BMP5_chr6_55748653_55880590	0/0	t0020	2600	1	1	0	0	0	0	copy fasta	BMP5	chr6	55748653	55880590
BMP5_chr6_55748653_55880590	0/0	t0021	2604	1	1	0	0	0	0	copy fasta	BMP5	chr6	55748653	55880590
BMP5_chr6_55748653_55880590	0/0	t0022	2600	1	0	1	0	0	0	copy fasta	BMP5	chr6	55748653	55880590
BMP5_chr6_55748653_55880590	0/0	t0023	2600	1	0	0	1	0	0	copy fasta	BMP5	chr6	55748653	55880590
BMP5_chr6_55748653_55880590	0/0	t0024	2600	1	1	0	0	0	0	copy fasta	BMP5	chr6	55748653	55880590
BMP5_chr6_55748653_55880590	0/0	t0025	2602	1	1	0	0	0	0	copy fasta	BMP5	chr6	55748653	55880590
BMP5_chr6_55748653_55880590	0/0	t0026	2606	1	0	0	0	0	1	copy fasta	BMP5	chr6	55748653	55880590
BMP5_chr6_55748653_55880590	0/0	t0027	2604	1	1	0	0	0	0	copy fasta	BMP5	chr6	55748653	55880590
BMP5_chr6_55748653_55880590	0/0	t0028	2601	1	0	1	0	0	0	copy fasta	BMP5	chr6	55748653	55880590
BMP5_chr6_55748653_55880590	0/0	t0029	2605	1	1	0	0	0	0	copy fasta	BMP5	chr6	55748653	55880590
BMP5_chr6_55748653_55880590	0/0	t0030	2601	1	1	0	0	0	0	copy fasta	BMP5	chr6	55748653	55880590
BMP5_chr6_55748653_55880590	0/0	t0031	2605	1	1	0	0	0	0	copy fasta	BMP5	chr6	55748653	55880590
BMP5_chr6_55748653_55880590	0/0	t0032	2605	1	1	0	0	0	0	copy fasta	BMP5	chr6	55748653	55880590
BMP5_chr6_55748653_55880590	0/0	t0033	2605	1	1	0	0	0	0	copy fasta	BMP5	chr6	55748653	55880590
BMP5_chr6_55748653_55880590	0/0	t0034	2604	1	1	0	0	0	0	copy fasta	BMP5	chr6	55748653	55880590
BMP6_chr6_7721099_7886728	0/1	t0001	2243	111	21	27	59	1	2	copy fasta	BMP6	chr6	7721099	7886728
BMP6_chr6_7721099_7886728	1/0	t0002	2243	83	11	24	21	8	18	copy fasta	BMP6	chr6	7721099	7886728
BMP6_chr6_7721099_7886728	0/0	t0003	2232	26	11	4	7	0	4	copy fasta	BMP6	chr6	7721099	7886728
BMP6_chr6_7721099_7886728	0/0	t0004	2232	12	1	0	11	0	0	copy fasta	BMP6	chr6	7721099	7886728
BMP6_chr6_7721099_7886728	0/0	t0005	2232	9	4	3	0	1	1	copy fasta	BMP6	chr6	7721099	7886728
BMP6_chr6_7721099_7886728	0/0	t0006	2221	6	1	1	2	0	2	copy fasta	BMP6	chr6	7721099	7886728