JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
STK33_chr11_8386870_8599228	1/0	t0006	1252	16	0	6	9	0	0	copy fasta	STK33	chr11	8386870	8599228
STK33_chr11_8386870_8599228	0/0	t0007	1252	9	8	1	0	0	0	copy fasta	STK33	chr11	8386870	8599228
STK33_chr11_8386870_8599228	0/0	t0008	1252	8	6	2	0	0	0	copy fasta	STK33	chr11	8386870	8599228
STK33_chr11_8386870_8599228	0/0	t0009	1252	7	7	0	0	0	0	copy fasta	STK33	chr11	8386870	8599228
STK33_chr11_8386870_8599228	0/0	t0010	1252	7	1	2	0	2	2	copy fasta	STK33	chr11	8386870	8599228
STK33_chr11_8386870_8599228	0/0	t0011	1252	4	0	0	2	0	2	copy fasta	STK33	chr11	8386870	8599228
STK33_chr11_8386870_8599228	0/0	t0012	1252	3	0	0	3	0	0	copy fasta	STK33	chr11	8386870	8599228
STK33_chr11_8386870_8599228	0/0	t0013	1252	2	2	0	0	0	0	copy fasta	STK33	chr11	8386870	8599228
STK33_chr11_8386870_8599228	0/0	t0014	1252	2	0	0	2	0	0	copy fasta	STK33	chr11	8386870	8599228
STK33_chr11_8386870_8599228	0/0	t0015	1252	2	2	0	0	0	0	copy fasta	STK33	chr11	8386870	8599228
STK33_chr11_8386870_8599228	0/0	t0016	1252	1	1	0	0	0	0	copy fasta	STK33	chr11	8386870	8599228
STK33_chr11_8386870_8599228	0/0	t0017	1252	1	1	0	0	0	0	copy fasta	STK33	chr11	8386870	8599228
STK33_chr11_8386870_8599228	0/0	t0018	1252	1	0	0	0	0	1	copy fasta	STK33	chr11	8386870	8599228
STK33_chr11_8386870_8599228	0/0	t0019	1252	1	1	0	0	0	0	copy fasta	STK33	chr11	8386870	8599228
STK33_chr11_8386870_8599228	0/0	t0020	1252	1	0	0	1	0	0	copy fasta	STK33	chr11	8386870	8599228
STK33_chr11_8386870_8599228	0/0	t0021	1252	1	1	0	0	0	0	copy fasta	STK33	chr11	8386870	8599228
STK33_chr11_8386870_8599228	0/0	t0022	1252	1	1	0	0	0	0	copy fasta	STK33	chr11	8386870	8599228
STK33_chr11_8386870_8599228	0/0	t0023	1252	1	0	0	0	0	1	copy fasta	STK33	chr11	8386870	8599228
STK33_chr11_8386870_8599228	0/0	t0024	1252	1	0	0	1	0	0	copy fasta	STK33	chr11	8386870	8599228
STK33_chr11_8386870_8599228	0/0	t0025	1252	1	1	0	0	0	0	copy fasta	STK33	chr11	8386870	8599228
STK33_chr11_8386870_8599228	0/0	t0026	1252	1	1	0	0	0	0	copy fasta	STK33	chr11	8386870	8599228
STK33_chr11_8386870_8599228	0/0	t0027	1252	1	0	0	1	0	0	copy fasta	STK33	chr11	8386870	8599228
STK33_chr11_8386870_8599228	0/0	t0028	1252	1	1	0	0	0	0	copy fasta	STK33	chr11	8386870	8599228
STK35_chr20_2096827_2153555	0/0	t0001	4862	113	11	31	53	2	16	copy fasta	STK35	chr20	2096827	2153555
STK35_chr20_2096827_2153555	1/0	t0002	4865	44	5	18	10	1	9	copy fasta	STK35	chr20	2096827	2153555
STK35_chr20_2096827_2153555	0/0	t0003	4865	24	22	2	0	0	0	copy fasta	STK35	chr20	2096827	2153555
STK35_chr20_2096827_2153555	0/0	t0004	4872	20	18	2	0	0	0	copy fasta	STK35	chr20	2096827	2153555
STK35_chr20_2096827_2153555	0/0	t0005	4873	11	1	7	0	1	2	copy fasta	STK35	chr20	2096827	2153555
STK35_chr20_2096827_2153555	0/0	t0006	4865	8	0	0	8	0	0	copy fasta	STK35	chr20	2096827	2153555
STK35_chr20_2096827_2153555	0/0	t0007	4872	5	5	0	0	0	0	copy fasta	STK35	chr20	2096827	2153555
STK35_chr20_2096827_2153555	0/0	t0008	4857	4	0	0	4	0	0	copy fasta	STK35	chr20	2096827	2153555
STK35_chr20_2096827_2153555	0/0	t0009	4865	4	4	0	0	0	0	copy fasta	STK35	chr20	2096827	2153555
STK35_chr20_2096827_2153555	0/0	t0010	4865	3	3	0	0	0	0	copy fasta	STK35	chr20	2096827	2153555
STK35_chr20_2096827_2153555	0/0	t0011	4862	3	0	3	0	0	0	copy fasta	STK35	chr20	2096827	2153555
STK35_chr20_2096827_2153555	0/1	t0012	4870	3	1	0	0	0	1	copy fasta	STK35	chr20	2096827	2153555
STK35_chr20_2096827_2153555	0/0	t0013	4864	2	2	0	0	0	0	copy fasta	STK35	chr20	2096827	2153555
STK35_chr20_2096827_2153555	0/0	t0014	4873	2	0	2	0	0	0	copy fasta	STK35	chr20	2096827	2153555
STK35_chr20_2096827_2153555	0/0	t0015	4862	2	1	1	0	0	0	copy fasta	STK35	chr20	2096827	2153555
STK35_chr20_2096827_2153555	0/0	t0016	4862	2	0	0	2	0	0	copy fasta	STK35	chr20	2096827	2153555
STK35_chr20_2096827_2153555	0/0	t0017	4862	2	0	0	0	0	2	copy fasta	STK35	chr20	2096827	2153555
STK35_chr20_2096827_2153555	0/0	t0018	4872	1	1	0	0	0	0	copy fasta	STK35	chr20	2096827	2153555
STK35_chr20_2096827_2153555	0/0	t0019	4865	1	0	0	0	0	1	copy fasta	STK35	chr20	2096827	2153555
STK35_chr20_2096827_2153555	0/0	t0020	4865	1	0	1	0	0	0	copy fasta	STK35	chr20	2096827	2153555
STK35_chr20_2096827_2153555	0/0	t0021	4865	1	0	1	0	0	0	copy fasta	STK35	chr20	2096827	2153555
STK35_chr20_2096827_2153555	0/0	t0022	4865	1	1	0	0	0	0	copy fasta	STK35	chr20	2096827	2153555
STK35_chr20_2096827_2153555	0/0	t0023	4856	1	1	0	0	0	0	copy fasta	STK35	chr20	2096827	2153555
STK35_chr20_2096827_2153555	0/0	t0024	4864	1	0	1	0	0	0	copy fasta	STK35	chr20	2096827	2153555
STK35_chr20_2096827_2153555	0/0	t0025	4864	1	0	0	0	0	1	copy fasta	STK35	chr20	2096827	2153555
STK35_chr20_2096827_2153555	0/0	t0026	4862	1	0	1	0	0	0	copy fasta	STK35	chr20	2096827	2153555
STK35_chr20_2096827_2153555	0/0	t0027	4862	1	0	0	1	0	0	copy fasta	STK35	chr20	2096827	2153555