JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
STK35_chr20_2096827_2153555	0/0	t0028	4862	1	0	1	0	0	0	copy fasta	STK35	chr20	2096827	2153555
STK35_chr20_2096827_2153555	0/0	t0029	4871	1	0	1	0	0	0	copy fasta	STK35	chr20	2096827	2153555
STK35_chr20_2096827_2153555	0/0	t0030	4862	1	1	0	0	0	0	copy fasta	STK35	chr20	2096827	2153555
STK35_chr20_2096827_2153555	0/0	t0031	4862	1	0	0	0	0	1	copy fasta	STK35	chr20	2096827	2153555
STK35_chr20_2096827_2153555	0/0	t0032	4862	1	0	0	1	0	0	copy fasta	STK35	chr20	2096827	2153555
STK35_chr20_2096827_2153555	0/0	t0033	4862	1	0	0	1	0	0	copy fasta	STK35	chr20	2096827	2153555
STK35_chr20_2096827_2153555	0/0	t0034	4862	1	0	0	0	0	1	copy fasta	STK35	chr20	2096827	2153555
STK35_chr20_2096827_2153555	0/0	t0035	4862	1	0	0	1	0	0	copy fasta	STK35	chr20	2096827	2153555
STK35_chr20_2096827_2153555	0/0	t0036	4862	1	1	0	0	0	0	copy fasta	STK35	chr20	2096827	2153555
STK35_chr20_2096827_2153555	0/0	t0037	4862	1	0	0	1	0	0	copy fasta	STK35	chr20	2096827	2153555
STK36_chr2_218667086_218707715	1/1	t0001	926	243	60	50	89	14	28	copy fasta	STK36	chr2	218667086	218707715
STK36_chr2_218667086_218707715	0/0	t0002	926	14	14	0	0	0	0	copy fasta	STK36	chr2	218667086	218707715
STK36_chr2_218667086_218707715	0/0	t0003	926	5	5	0	0	0	0	copy fasta	STK36	chr2	218667086	218707715
STK36_chr2_218667086_218707715	0/0	t0004	926	5	5	0	0	0	0	copy fasta	STK36	chr2	218667086	218707715
STK36_chr2_218667086_218707715	0/0	t0005	926	4	3	1	0	0	0	copy fasta	STK36	chr2	218667086	218707715
STK36_chr2_218667086_218707715	0/0	t0006	926	2	0	2	0	0	0	copy fasta	STK36	chr2	218667086	218707715
STK36_chr2_218667086_218707715	0/0	t0007	926	2	2	0	0	0	0	copy fasta	STK36	chr2	218667086	218707715
STK36_chr2_218667086_218707715	0/0	t0008	926	1	0	1	0	0	0	copy fasta	STK36	chr2	218667086	218707715
STK36_chr2_218667086_218707715	0/0	t0009	926	1	1	0	0	0	0	copy fasta	STK36	chr2	218667086	218707715
STK36_chr2_218667086_218707715	0/0	t0010	926	1	0	0	1	0	0	copy fasta	STK36	chr2	218667086	218707715
STK36_chr2_218667086_218707715	0/0	t0011	926	1	1	0	0	0	0	copy fasta	STK36	chr2	218667086	218707715
STK36_chr2_218667086_218707715	0/0	t0012	926	1	1	0	0	0	0	copy fasta	STK36	chr2	218667086	218707715
STK38L_chr12_27239286_27330959	0/0	t0001	3565	115	22	31	50	3	9	copy fasta	STK38L	chr12	27239286	27330959
STK38L_chr12_27239286_27330959	0/0	t0002	3565	91	15	9	57	1	9	copy fasta	STK38L	chr12	27239286	27330959
STK38L_chr12_27239286_27330959	0/0	t0003	3565	72	2	5	58	0	7	copy fasta	STK38L	chr12	27239286	27330959
STK38L_chr12_27239286_27330959	1/0	t0004	3563	43	6	15	9	4	8	copy fasta	STK38L	chr12	27239286	27330959
STK38L_chr12_27239286_27330959	0/0	t0005	3565	18	17	1	0	0	0	copy fasta	STK38L	chr12	27239286	27330959
STK38L_chr12_27239286_27330959	0/1	t0006	3565	12	6	2	0	0	3	copy fasta	STK38L	chr12	27239286	27330959
STK38L_chr12_27239286_27330959	0/0	t0007	3565	6	6	0	0	0	0	copy fasta	STK38L	chr12	27239286	27330959
STK38L_chr12_27239286_27330959	0/0	t0008	3565	3	3	0	0	0	0	copy fasta	STK38L	chr12	27239286	27330959
STK38L_chr12_27239286_27330959	0/0	t0009	3565	2	2	0	0	0	0	copy fasta	STK38L	chr12	27239286	27330959
STK38L_chr12_27239286_27330959	0/0	t0010	3563	2	0	0	2	0	0	copy fasta	STK38L	chr12	27239286	27330959
STK38L_chr12_27239286_27330959	0/0	t0011	3565	2	2	0	0	0	0	copy fasta	STK38L	chr12	27239286	27330959
STK38L_chr12_27239286_27330959	0/0	t0012	3565	2	2	0	0	0	0	copy fasta	STK38L	chr12	27239286	27330959
STK38L_chr12_27239286_27330959	0/0	t0013	3565	1	0	0	1	0	0	copy fasta	STK38L	chr12	27239286	27330959
STK38L_chr12_27239286_27330959	0/0	t0014	3565	1	1	0	0	0	0	copy fasta	STK38L	chr12	27239286	27330959
STK38L_chr12_27239286_27330959	0/0	t0015	3565	1	1	0	0	0	0	copy fasta	STK38L	chr12	27239286	27330959
STK38L_chr12_27239286_27330959	0/0	t0016	3565	1	0	0	1	0	0	copy fasta	STK38L	chr12	27239286	27330959
STK38L_chr12_27239286_27330959	0/0	t0017	3565	1	0	1	0	0	0	copy fasta	STK38L	chr12	27239286	27330959
STK38L_chr12_27239286_27330959	0/0	t0018	3565	1	1	0	0	0	0	copy fasta	STK38L	chr12	27239286	27330959
STK38_chr6_36488892_36552479	1/1	t0001	2188	219	36	50	109	6	16	copy fasta	STK38	chr6	36488892	36552479
STK38_chr6_36488892_36552479	0/0	t0002	2188	96	23	10	52	0	11	copy fasta	STK38	chr6	36488892	36552479
STK38_chr6_36488892_36552479	0/0	t0003	2187	20	1	6	4	4	5	copy fasta	STK38	chr6	36488892	36552479
STK38_chr6_36488892_36552479	0/0	t0004	2188	9	1	4	4	0	0	copy fasta	STK38	chr6	36488892	36552479
STK38_chr6_36488892_36552479	0/0	t0005	2188	9	1	6	2	0	0	copy fasta	STK38	chr6	36488892	36552479
STK38_chr6_36488892_36552479	0/0	t0006	2188	8	7	1	0	0	0	copy fasta	STK38	chr6	36488892	36552479
STK38_chr6_36488892_36552479	0/0	t0007	2188	6	0	0	6	0	0	copy fasta	STK38	chr6	36488892	36552479
STK38_chr6_36488892_36552479	0/0	t0008	2188	5	4	0	0	0	1	copy fasta	STK38	chr6	36488892	36552479
STK38_chr6_36488892_36552479	0/0	t0009	2188	4	4	0	0	0	0	copy fasta	STK38	chr6	36488892	36552479
STK38_chr6_36488892_36552479	0/0	t0010	2184	4	4	0	0	0	0	copy fasta	STK38	chr6	36488892	36552479