JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
STK38_chr6_36488892_36552479	0/0	t0011	2188	2	2	0	0	0	0	copy fasta	STK38	chr6	36488892	36552479
STK38_chr6_36488892_36552479	0/0	t0012	2188	2	0	0	0	2	0	copy fasta	STK38	chr6	36488892	36552479
STK38_chr6_36488892_36552479	0/0	t0013	2188	2	0	0	2	0	0	copy fasta	STK38	chr6	36488892	36552479
STK38_chr6_36488892_36552479	0/0	t0014	2188	1	1	0	0	0	0	copy fasta	STK38	chr6	36488892	36552479
STK38_chr6_36488892_36552479	0/0	t0015	2188	1	0	0	0	0	1	copy fasta	STK38	chr6	36488892	36552479
STK38_chr6_36488892_36552479	0/0	t0016	2188	1	1	0	0	0	0	copy fasta	STK38	chr6	36488892	36552479
STK38_chr6_36488892_36552479	0/0	t0017	2188	1	1	0	0	0	0	copy fasta	STK38	chr6	36488892	36552479
STK38_chr6_36488892_36552479	0/0	t0018	2188	1	0	0	0	0	1	copy fasta	STK38	chr6	36488892	36552479
STK38_chr6_36488892_36552479	0/0	t0019	2188	1	0	1	0	0	0	copy fasta	STK38	chr6	36488892	36552479
STK38_chr6_36488892_36552479	0/0	t0020	2188	1	0	0	0	0	1	copy fasta	STK38	chr6	36488892	36552479
STK38_chr6_36488892_36552479	0/0	t0021	2188	1	0	0	1	0	0	copy fasta	STK38	chr6	36488892	36552479
STK38_chr6_36488892_36552479	0/0	t0022	2188	1	1	0	0	0	0	copy fasta	STK38	chr6	36488892	36552479
STK38_chr6_36488892_36552479	0/0	t0023	2188	1	0	0	0	0	1	copy fasta	STK38	chr6	36488892	36552479
STK38_chr6_36488892_36552479	0/0	t0024	2188	1	0	0	0	0	1	copy fasta	STK38	chr6	36488892	36552479
STK38_chr6_36488892_36552479	0/0	t0025	2188	1	1	0	0	0	0	copy fasta	STK38	chr6	36488892	36552479
STK39_chr2_167949022_168252595	1/1	t0001	1635	97	27	17	40	3	8	copy fasta	STK39	chr2	167949022	168252595
STK39_chr2_167949022_168252595	0/0	t0002	1647	54	9	8	23	4	10	copy fasta	STK39	chr2	167949022	168252595
STK39_chr2_167949022_168252595	0/0	t0003	1656	27	0	4	18	1	4	copy fasta	STK39	chr2	167949022	168252595
STK39_chr2_167949022_168252595	0/0	t0004	1635	12	12	0	0	0	0	copy fasta	STK39	chr2	167949022	168252595
STK39_chr2_167949022_168252595	0/0	t0005	1644	10	0	0	9	0	1	copy fasta	STK39	chr2	167949022	168252595
STK39_chr2_167949022_168252595	0/0	t0006	1659	9	0	1	8	0	0	copy fasta	STK39	chr2	167949022	168252595
STK39_chr2_167949022_168252595	0/0	t0007	1638	8	4	1	2	0	1	copy fasta	STK39	chr2	167949022	168252595
STK39_chr2_167949022_168252595	0/0	t0008	1638	5	5	0	0	0	0	copy fasta	STK39	chr2	167949022	168252595
STK39_chr2_167949022_168252595	0/0	t0009	1650	4	1	3	0	0	0	copy fasta	STK39	chr2	167949022	168252595
STK39_chr2_167949022_168252595	0/0	t0010	1647	4	0	0	2	0	2	copy fasta	STK39	chr2	167949022	168252595
STK39_chr2_167949022_168252595	0/0	t0011	1641	4	2	2	0	0	0	copy fasta	STK39	chr2	167949022	168252595
STK39_chr2_167949022_168252595	0/0	t0012	1656	3	3	0	0	0	0	copy fasta	STK39	chr2	167949022	168252595
STK39_chr2_167949022_168252595	0/0	t0013	1653	3	3	0	0	0	0	copy fasta	STK39	chr2	167949022	168252595
STK39_chr2_167949022_168252595	0/0	t0014	1641	3	0	1	2	0	0	copy fasta	STK39	chr2	167949022	168252595
STK39_chr2_167949022_168252595	0/0	t0015	1659	2	2	0	0	0	0	copy fasta	STK39	chr2	167949022	168252595
STK39_chr2_167949022_168252595	0/0	t0016	1644	2	2	0	0	0	0	copy fasta	STK39	chr2	167949022	168252595
STK39_chr2_167949022_168252595	0/0	t0017	1641	2	2	0	0	0	0	copy fasta	STK39	chr2	167949022	168252595
STK39_chr2_167949022_168252595	0/0	t0018	1665	1	0	0	0	0	1	copy fasta	STK39	chr2	167949022	168252595
STK39_chr2_167949022_168252595	0/0	t0019	1668	1	1	0	0	0	0	copy fasta	STK39	chr2	167949022	168252595
STK39_chr2_167949022_168252595	0/0	t0020	1662	1	1	0	0	0	0	copy fasta	STK39	chr2	167949022	168252595
STK39_chr2_167949022_168252595	0/0	t0021	1662	1	1	0	0	0	0	copy fasta	STK39	chr2	167949022	168252595
STK39_chr2_167949022_168252595	0/0	t0022	1662	1	0	0	1	0	0	copy fasta	STK39	chr2	167949022	168252595
STK39_chr2_167949022_168252595	0/0	t0023	1655	1	0	0	1	0	0	copy fasta	STK39	chr2	167949022	168252595
STK39_chr2_167949022_168252595	0/0	t0024	1662	1	1	0	0	0	0	copy fasta	STK39	chr2	167949022	168252595
STK39_chr2_167949022_168252595	0/0	t0025	1656	1	0	0	1	0	0	copy fasta	STK39	chr2	167949022	168252595
STK39_chr2_167949022_168252595	0/0	t0026	1653	1	1	0	0	0	0	copy fasta	STK39	chr2	167949022	168252595
STK39_chr2_167949022_168252595	0/0	t0027	1647	1	0	0	1	0	0	copy fasta	STK39	chr2	167949022	168252595
STK39_chr2_167949022_168252595	0/0	t0028	1647	1	1	0	0	0	0	copy fasta	STK39	chr2	167949022	168252595
STK39_chr2_167949022_168252595	0/0	t0029	1638	1	1	0	0	0	0	copy fasta	STK39	chr2	167949022	168252595
STK39_chr2_167949022_168252595	0/0	t0030	1638	1	1	0	0	0	0	copy fasta	STK39	chr2	167949022	168252595
STK39_chr2_167949022_168252595	0/0	t0031	1638	1	1	0	0	0	0	copy fasta	STK39	chr2	167949022	168252595
STK39_chr2_167949022_168252595	0/0	t0032	1635	1	0	1	0	0	0	copy fasta	STK39	chr2	167949022	168252595
STK39_chr2_167949022_168252595	0/0	t0033	1635	1	1	0	0	0	0	copy fasta	STK39	chr2	167949022	168252595
STK39_chr2_167949022_168252595	0/0	t0034	1635	1	1	0	0	0	0	copy fasta	STK39	chr2	167949022	168252595
STK39_chr2_167949022_168252595	0/0	t0035	1674	1	1	0	0	0	0	copy fasta	STK39	chr2	167949022	168252595