JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
STK39_chr2_167949022_168252595	0/0	t0036	1656	1	0	1	0	0	0	copy fasta	STK39	chr2	167949022	168252595
STK39_chr2_167949022_168252595	0/0	t0037	1647	1	0	1	0	0	0	copy fasta	STK39	chr2	167949022	168252595
STK39_chr2_167949022_168252595	0/0	t0038	1635	1	0	0	0	0	1	copy fasta	STK39	chr2	167949022	168252595
STK3_chr8_98449633_98830688	1/0	t0001	1358	86	28	11	31	4	11	copy fasta	STK3	chr8	98449633	98830688
STK3_chr8_98449633_98830688	0/1	t0002	1358	75	15	16	33	4	6	copy fasta	STK3	chr8	98449633	98830688
STK3_chr8_98449633_98830688	0/0	t0003	1358	6	6	0	0	0	0	copy fasta	STK3	chr8	98449633	98830688
STK3_chr8_98449633_98830688	0/0	t0004	1358	1	1	0	0	0	0	copy fasta	STK3	chr8	98449633	98830688
STK3_chr8_98449633_98830688	0/0	t0005	1358	1	0	0	0	0	1	copy fasta	STK3	chr8	98449633	98830688
STK3_chr8_98449633_98830688	0/0	t0006	1358	1	0	1	0	0	0	copy fasta	STK3	chr8	98449633	98830688
STK40_chr1_36334628_36390924	1/0	t0001	2338	260	57	56	101	13	32	copy fasta	STK40	chr1	36334628	36390924
STK40_chr1_36334628_36390924	0/1	t0002	2338	27	4	7	6	2	7	copy fasta	STK40	chr1	36334628	36390924
STK40_chr1_36334628_36390924	0/0	t0003	2341	9	2	2	4	1	0	copy fasta	STK40	chr1	36334628	36390924
STK40_chr1_36334628_36390924	0/0	t0004	2338	8	0	0	8	0	0	copy fasta	STK40	chr1	36334628	36390924
STK40_chr1_36334628_36390924	0/0	t0005	2338	7	6	1	0	0	0	copy fasta	STK40	chr1	36334628	36390924
STK40_chr1_36334628_36390924	0/0	t0006	2338	7	5	2	0	0	0	copy fasta	STK40	chr1	36334628	36390924
STK40_chr1_36334628_36390924	0/0	t0007	2338	6	4	0	0	2	0	copy fasta	STK40	chr1	36334628	36390924
STK40_chr1_36334628_36390924	0/0	t0008	2338	3	3	0	0	0	0	copy fasta	STK40	chr1	36334628	36390924
STK40_chr1_36334628_36390924	0/0	t0009	2338	3	2	1	0	0	0	copy fasta	STK40	chr1	36334628	36390924
STK40_chr1_36334628_36390924	0/0	t0010	2338	3	0	0	3	0	0	copy fasta	STK40	chr1	36334628	36390924
STK40_chr1_36334628_36390924	0/0	t0011	2338	2	2	0	0	0	0	copy fasta	STK40	chr1	36334628	36390924
STK40_chr1_36334628_36390924	0/0	t0012	2338	2	0	0	2	0	0	copy fasta	STK40	chr1	36334628	36390924
STK40_chr1_36334628_36390924	0/0	t0013	2338	2	0	2	0	0	0	copy fasta	STK40	chr1	36334628	36390924
STK40_chr1_36334628_36390924	0/0	t0014	2338	2	1	0	0	0	1	copy fasta	STK40	chr1	36334628	36390924
STK40_chr1_36334628_36390924	0/0	t0015	2338	1	1	0	0	0	0	copy fasta	STK40	chr1	36334628	36390924
STK40_chr1_36334628_36390924	0/0	t0016	2338	1	1	0	0	0	0	copy fasta	STK40	chr1	36334628	36390924
STK40_chr1_36334628_36390924	0/0	t0017	2338	1	0	1	0	0	0	copy fasta	STK40	chr1	36334628	36390924
STK40_chr1_36334628_36390924	0/0	t0018	2338	1	0	0	1	0	0	copy fasta	STK40	chr1	36334628	36390924
STK40_chr1_36334628_36390924	0/0	t0019	2338	1	0	0	1	0	0	copy fasta	STK40	chr1	36334628	36390924
STK40_chr1_36334628_36390924	0/0	t0020	2338	1	0	0	1	0	0	copy fasta	STK40	chr1	36334628	36390924
STK40_chr1_36334628_36390924	0/0	t0021	2338	1	0	0	1	0	0	copy fasta	STK40	chr1	36334628	36390924
STK40_chr1_36334628_36390924	0/0	t0022	2338	1	0	0	0	0	1	copy fasta	STK40	chr1	36334628	36390924
STK40_chr1_36334628_36390924	0/0	t0023	2338	1	0	0	0	0	1	copy fasta	STK40	chr1	36334628	36390924
STK4_chr20_44961512_45085021	1/0	t0001	4903	94	13	14	48	3	15	copy fasta	STK4	chr20	44961512	45085021
STK4_chr20_44961512_45085021	0/0	t0002	4901	38	0	4	27	1	6	copy fasta	STK4	chr20	44961512	45085021
STK4_chr20_44961512_45085021	0/0	t0003	4903	32	11	7	0	7	7	copy fasta	STK4	chr20	44961512	45085021
STK4_chr20_44961512_45085021	0/0	t0004	4904	28	0	6	18	0	4	copy fasta	STK4	chr20	44961512	45085021
STK4_chr20_44961512_45085021	0/0	t0005	4905	28	24	4	0	0	0	copy fasta	STK4	chr20	44961512	45085021
STK4_chr20_44961512_45085021	0/0	t0006	4903	13	0	0	13	0	0	copy fasta	STK4	chr20	44961512	45085021
STK4_chr20_44961512_45085021	0/1	t0007	4904	13	1	4	1	2	4	copy fasta	STK4	chr20	44961512	45085021
STK4_chr20_44961512_45085021	0/0	t0008	4902	9	8	1	0	0	0	copy fasta	STK4	chr20	44961512	45085021
STK4_chr20_44961512_45085021	0/0	t0009	4903	8	0	0	8	0	0	copy fasta	STK4	chr20	44961512	45085021
STK4_chr20_44961512_45085021	0/0	t0010	4904	7	0	0	6	0	1	copy fasta	STK4	chr20	44961512	45085021
STK4_chr20_44961512_45085021	0/0	t0011	4902	7	5	2	0	0	0	copy fasta	STK4	chr20	44961512	45085021
STK4_chr20_44961512_45085021	0/0	t0012	4904	6	4	1	1	0	0	copy fasta	STK4	chr20	44961512	45085021
STK4_chr20_44961512_45085021	0/0	t0013	4903	4	4	0	0	0	0	copy fasta	STK4	chr20	44961512	45085021
STK4_chr20_44961512_45085021	0/0	t0014	4903	3	3	0	0	0	0	copy fasta	STK4	chr20	44961512	45085021
STK4_chr20_44961512_45085021	0/0	t0015	4902	3	0	0	3	0	0	copy fasta	STK4	chr20	44961512	45085021
STK4_chr20_44961512_45085021	0/0	t0016	4904	2	1	0	1	0	0	copy fasta	STK4	chr20	44961512	45085021
STK4_chr20_44961512_45085021	0/0	t0017	4903	2	0	0	2	0	0	copy fasta	STK4	chr20	44961512	45085021
STK4_chr20_44961512_45085021	0/0	t0018	4904	2	2	0	0	0	0	copy fasta	STK4	chr20	44961512	45085021