JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
STK4_chr20_44961512_45085021	0/0	t0019	4903	2	2	0	0	0	0	copy fasta	STK4	chr20	44961512	45085021
STK4_chr20_44961512_45085021	0/0	t0020	4904	1	0	1	0	0	0	copy fasta	STK4	chr20	44961512	45085021
STK4_chr20_44961512_45085021	0/0	t0021	4905	1	1	0	0	0	0	copy fasta	STK4	chr20	44961512	45085021
STK4_chr20_44961512_45085021	0/0	t0022	4903	1	0	0	1	0	0	copy fasta	STK4	chr20	44961512	45085021
STK4_chr20_44961512_45085021	0/0	t0023	4903	1	0	0	1	0	0	copy fasta	STK4	chr20	44961512	45085021
STK4_chr20_44961512_45085021	0/0	t0024	4903	1	0	0	1	0	0	copy fasta	STK4	chr20	44961512	45085021
STK4_chr20_44961512_45085021	0/0	t0025	4903	1	0	1	0	0	0	copy fasta	STK4	chr20	44961512	45085021
STK4_chr20_44961512_45085021	0/0	t0026	4902	1	0	0	0	1	0	copy fasta	STK4	chr20	44961512	45085021
STK4_chr20_44961512_45085021	0/0	t0027	4903	1	1	0	0	0	0	copy fasta	STK4	chr20	44961512	45085021
STK4_chr20_44961512_45085021	0/0	t0028	4899	1	0	0	1	0	0	copy fasta	STK4	chr20	44961512	45085021
STK4_chr20_44961512_45085021	0/0	t0029	4903	1	1	0	0	0	0	copy fasta	STK4	chr20	44961512	45085021
STK4_chr20_44961512_45085021	0/0	t0030	4903	1	1	0	0	0	0	copy fasta	STK4	chr20	44961512	45085021
STK4_chr20_44961512_45085021	0/0	t0031	4903	1	0	0	0	0	1	copy fasta	STK4	chr20	44961512	45085021
STK4_chr20_44961512_45085021	0/0	t0032	4903	1	0	0	1	0	0	copy fasta	STK4	chr20	44961512	45085021
STK4_chr20_44961512_45085021	0/0	t0033	4902	1	0	1	0	0	0	copy fasta	STK4	chr20	44961512	45085021
STK4_chr20_44961512_45085021	0/0	t0034	4903	1	1	0	0	0	0	copy fasta	STK4	chr20	44961512	45085021
STK4_chr20_44961512_45085021	0/0	t0035	4903	1	1	0	0	0	0	copy fasta	STK4	chr20	44961512	45085021
STK4_chr20_44961512_45085021	0/0	t0036	4904	1	0	1	0	0	0	copy fasta	STK4	chr20	44961512	45085021
STK4_chr20_44961512_45085021	0/0	t0037	4903	1	1	0	0	0	0	copy fasta	STK4	chr20	44961512	45085021
STK4_chr20_44961512_45085021	0/0	t0038	4902	1	1	0	0	0	0	copy fasta	STK4	chr20	44961512	45085021
STK4_chr20_44961512_45085021	0/0	t0039	4902	1	1	0	0	0	0	copy fasta	STK4	chr20	44961512	45085021
STK4_chr20_44961512_45085021	0/0	t0040	4901	1	0	0	1	0	0	copy fasta	STK4	chr20	44961512	45085021
STK4_chr20_44961512_45085021	0/0	t0041	4901	1	0	0	1	0	0	copy fasta	STK4	chr20	44961512	45085021
STK4_chr20_44961512_45085021	0/0	t0042	4902	1	1	0	0	0	0	copy fasta	STK4	chr20	44961512	45085021
STK4_chr20_44961512_45085021	0/0	t0043	4902	1	1	0	0	0	0	copy fasta	STK4	chr20	44961512	45085021
STK4_chr20_44961512_45085021	0/0	t0044	4902	1	1	0	0	0	0	copy fasta	STK4	chr20	44961512	45085021
STK4_chr20_44961512_45085021	0/0	t0045	4903	1	0	0	1	0	0	copy fasta	STK4	chr20	44961512	45085021
STK4_chr20_44961512_45085021	0/0	t0046	4905	1	0	1	0	0	0	copy fasta	STK4	chr20	44961512	45085021
STKLD1_chr9_133371366_133411096	1/0	t0001	784	186	34	29	94	10	18	copy fasta	STKLD1	chr9	133371366	133411096
STKLD1_chr9_133371366_133411096	0/1	t0002	784	115	28	34	31	4	17	copy fasta	STKLD1	chr9	133371366	133411096
STKLD1_chr9_133371366_133411096	0/0	t0003	784	15	15	0	0	0	0	copy fasta	STKLD1	chr9	133371366	133411096
STKLD1_chr9_133371366_133411096	0/0	t0004	784	7	7	0	0	0	0	copy fasta	STKLD1	chr9	133371366	133411096
STKLD1_chr9_133371366_133411096	0/0	t0005	784	7	0	2	0	2	3	copy fasta	STKLD1	chr9	133371366	133411096
STKLD1_chr9_133371366_133411096	0/0	t0006	784	6	0	0	6	0	0	copy fasta	STKLD1	chr9	133371366	133411096
STKLD1_chr9_133371366_133411096	0/0	t0007	784	4	3	1	0	0	0	copy fasta	STKLD1	chr9	133371366	133411096
STKLD1_chr9_133371366_133411096	0/0	t0008	784	4	0	2	0	0	2	copy fasta	STKLD1	chr9	133371366	133411096
STKLD1_chr9_133371366_133411096	0/0	t0009	784	4	0	0	4	0	0	copy fasta	STKLD1	chr9	133371366	133411096
STKLD1_chr9_133371366_133411096	0/0	t0010	784	3	2	1	0	0	0	copy fasta	STKLD1	chr9	133371366	133411096
STKLD1_chr9_133371366_133411096	0/0	t0011	784	1	1	0	0	0	0	copy fasta	STKLD1	chr9	133371366	133411096
STKLD1_chr9_133371366_133411096	0/0	t0012	784	1	0	0	1	0	0	copy fasta	STKLD1	chr9	133371366	133411096
STKLD1_chr9_133371366_133411096	0/0	t0013	784	1	0	1	0	0	0	copy fasta	STKLD1	chr9	133371366	133411096
STKLD1_chr9_133371366_133411096	0/0	t0014	784	1	0	0	1	0	0	copy fasta	STKLD1	chr9	133371366	133411096
STKLD1_chr9_133371366_133411096	0/0	t0015	784	1	0	0	1	0	0	copy fasta	STKLD1	chr9	133371366	133411096
STMN1_chr1_25895116_25911419	1/1	t0001	994	365	79	63	176	12	33	copy fasta	STMN1	chr1	25895116	25911419
STMN1_chr1_25895116_25911419	0/0	t0002	994	7	6	1	0	0	0	copy fasta	STMN1	chr1	25895116	25911419
STMN1_chr1_25895116_25911419	0/0	t0003	993	7	6	1	0	0	0	copy fasta	STMN1	chr1	25895116	25911419
STMN1_chr1_25895116_25911419	0/0	t0004	994	1	1	0	0	0	0	copy fasta	STMN1	chr1	25895116	25911419
STMN1_chr1_25895116_25911419	0/0	t0005	994	1	0	0	0	0	1	copy fasta	STMN1	chr1	25895116	25911419
STMN1_chr1_25895116_25911419	0/0	t0006	994	1	0	1	0	0	0	copy fasta	STMN1	chr1	25895116	25911419
STMN2_chr8_79606117_79671158	1/1	t0001	1364	370	72	71	163	16	46	copy fasta	STMN2	chr8	79606117	79671158