JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
STMN2_chr8_79606117_79671158	0/0	t0002	1363	10	9	0	1	0	0	copy fasta	STMN2	chr8	79606117	79671158
STMN2_chr8_79606117_79671158	0/0	t0003	1365	10	0	3	6	0	1	copy fasta	STMN2	chr8	79606117	79671158
STMN2_chr8_79606117_79671158	0/0	t0004	1364	6	0	0	5	0	1	copy fasta	STMN2	chr8	79606117	79671158
STMN2_chr8_79606117_79671158	0/0	t0005	1364	2	2	0	0	0	0	copy fasta	STMN2	chr8	79606117	79671158
STMN2_chr8_79606117_79671158	0/0	t0006	1364	1	1	0	0	0	0	copy fasta	STMN2	chr8	79606117	79671158
STMN2_chr8_79606117_79671158	0/0	t0007	1365	1	0	0	1	0	0	copy fasta	STMN2	chr8	79606117	79671158
STMN2_chr8_79606117_79671158	0/0	t0008	1364	1	1	0	0	0	0	copy fasta	STMN2	chr8	79606117	79671158
STMN2_chr8_79606117_79671158	0/0	t0009	1364	1	1	0	0	0	0	copy fasta	STMN2	chr8	79606117	79671158
STMN3_chr20_63634712_63658424	0/1	t0001	1730	74	3	37	15	8	10	copy fasta	STMN3	chr20	63634712	63658424
STMN3_chr20_63634712_63658424	0/0	t0002	1706	49	1	7	40	0	1	copy fasta	STMN3	chr20	63634712	63658424
STMN3_chr20_63634712_63658424	0/0	t0003	1730	31	7	7	13	0	4	copy fasta	STMN3	chr20	63634712	63658424
STMN3_chr20_63634712_63658424	0/0	t0004	1706	26	0	1	21	1	3	copy fasta	STMN3	chr20	63634712	63658424
STMN3_chr20_63634712_63658424	0/0	t0005	1730	19	10	7	0	1	1	copy fasta	STMN3	chr20	63634712	63658424
STMN3_chr20_63634712_63658424	0/0	t0006	1730	16	16	0	0	0	0	copy fasta	STMN3	chr20	63634712	63658424
STMN3_chr20_63634712_63658424	0/0	t0007	1730	10	0	0	8	0	2	copy fasta	STMN3	chr20	63634712	63658424
STMN3_chr20_63634712_63658424	0/0	t0008	1730	9	7	1	0	0	1	copy fasta	STMN3	chr20	63634712	63658424
STMN3_chr20_63634712_63658424	0/0	t0009	1730	9	4	2	2	1	0	copy fasta	STMN3	chr20	63634712	63658424
STMN3_chr20_63634712_63658424	0/0	t0010	1730	9	0	0	7	0	2	copy fasta	STMN3	chr20	63634712	63658424
STMN3_chr20_63634712_63658424	0/0	t0011	1730	9	0	0	9	0	0	copy fasta	STMN3	chr20	63634712	63658424
STMN3_chr20_63634712_63658424	0/0	t0012	1730	8	2	3	0	2	1	copy fasta	STMN3	chr20	63634712	63658424
STMN3_chr20_63634712_63658424	0/0	t0013	1706	7	0	2	3	2	0	copy fasta	STMN3	chr20	63634712	63658424
STMN3_chr20_63634712_63658424	0/0	t0014	1730	6	2	4	0	0	0	copy fasta	STMN3	chr20	63634712	63658424
STMN3_chr20_63634712_63658424	0/0	t0015	1706	6	0	0	6	0	0	copy fasta	STMN3	chr20	63634712	63658424
STMN3_chr20_63634712_63658424	0/0	t0016	1729	5	5	0	0	0	0	copy fasta	STMN3	chr20	63634712	63658424
STMN3_chr20_63634712_63658424	0/0	t0017	1730	5	2	0	0	1	2	copy fasta	STMN3	chr20	63634712	63658424
STMN3_chr20_63634712_63658424	0/0	t0018	1706	4	0	0	3	0	1	copy fasta	STMN3	chr20	63634712	63658424
STMN3_chr20_63634712_63658424	0/0	t0019	1730	4	4	0	0	0	0	copy fasta	STMN3	chr20	63634712	63658424
STMN3_chr20_63634712_63658424	0/0	t0020	1706	4	0	1	1	0	2	copy fasta	STMN3	chr20	63634712	63658424
STMN3_chr20_63634712_63658424	0/0	t0021	1706	3	0	1	1	0	1	copy fasta	STMN3	chr20	63634712	63658424
STMN3_chr20_63634712_63658424	0/0	t0022	1730	3	3	0	0	0	0	copy fasta	STMN3	chr20	63634712	63658424
STMN3_chr20_63634712_63658424	0/0	t0023	1730	3	1	0	2	0	0	copy fasta	STMN3	chr20	63634712	63658424
STMN3_chr20_63634712_63658424	0/0	t0024	1706	3	0	0	3	0	0	copy fasta	STMN3	chr20	63634712	63658424
STMN3_chr20_63634712_63658424	0/0	t0025	1706	2	0	0	2	0	0	copy fasta	STMN3	chr20	63634712	63658424
STMN3_chr20_63634712_63658424	0/0	t0026	1730	2	0	0	2	0	0	copy fasta	STMN3	chr20	63634712	63658424
STMN3_chr20_63634712_63658424	0/0	t0027	1706	2	0	1	0	1	0	copy fasta	STMN3	chr20	63634712	63658424
STMN3_chr20_63634712_63658424	0/0	t0028	1707	2	0	1	1	0	0	copy fasta	STMN3	chr20	63634712	63658424
STMN3_chr20_63634712_63658424	0/0	t0029	1730	2	0	0	0	0	2	copy fasta	STMN3	chr20	63634712	63658424
STMN3_chr20_63634712_63658424	0/0	t0030	1730	2	1	0	1	0	0	copy fasta	STMN3	chr20	63634712	63658424
STMN3_chr20_63634712_63658424	0/0	t0031	1730	2	2	0	0	0	0	copy fasta	STMN3	chr20	63634712	63658424
STMN3_chr20_63634712_63658424	0/0	t0032	1731	2	0	1	0	0	1	copy fasta	STMN3	chr20	63634712	63658424
STMN3_chr20_63634712_63658424	0/0	t0033	1730	2	1	1	0	0	0	copy fasta	STMN3	chr20	63634712	63658424
STMN3_chr20_63634712_63658424	0/0	t0034	1731	2	0	0	2	0	0	copy fasta	STMN3	chr20	63634712	63658424
STMN3_chr20_63634712_63658424	0/0	t0035	1730	2	0	0	0	0	2	copy fasta	STMN3	chr20	63634712	63658424
STMN3_chr20_63634712_63658424	0/0	t0036	1730	2	2	0	0	0	0	copy fasta	STMN3	chr20	63634712	63658424
STMN3_chr20_63634712_63658424	0/0	t0037	1730	2	0	0	1	0	1	copy fasta	STMN3	chr20	63634712	63658424
STMN3_chr20_63634712_63658424	0/0	t0038	1707	2	0	0	2	0	0	copy fasta	STMN3	chr20	63634712	63658424
STMN3_chr20_63634712_63658424	0/0	t0039	1730	2	2	0	0	0	0	copy fasta	STMN3	chr20	63634712	63658424
STMN3_chr20_63634712_63658424	0/0	t0040	1730	2	2	0	0	0	0	copy fasta	STMN3	chr20	63634712	63658424
STMN3_chr20_63634712_63658424	0/0	t0041	1730	1	1	0	0	0	0	copy fasta	STMN3	chr20	63634712	63658424
STMN3_chr20_63634712_63658424	0/0	t0042	1730	1	1	0	0	0	0	copy fasta	STMN3	chr20	63634712	63658424