JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
STMN3_chr20_63634712_63658424	0/0	t0043	1707	1	0	1	0	0	0	copy fasta	STMN3	chr20	63634712	63658424
STMN3_chr20_63634712_63658424	1/0	t0044	1706	1	0	0	0	0	0	copy fasta	STMN3	chr20	63634712	63658424
STMN3_chr20_63634712_63658424	0/0	t0045	1731	1	0	0	1	0	0	copy fasta	STMN3	chr20	63634712	63658424
STMN3_chr20_63634712_63658424	0/0	t0046	1730	1	0	0	1	0	0	copy fasta	STMN3	chr20	63634712	63658424
STMN3_chr20_63634712_63658424	0/0	t0047	1706	1	0	0	0	1	0	copy fasta	STMN3	chr20	63634712	63658424
STMN3_chr20_63634712_63658424	0/0	t0048	1730	1	0	0	1	0	0	copy fasta	STMN3	chr20	63634712	63658424
STMN3_chr20_63634712_63658424	0/0	t0049	1729	1	1	0	0	0	0	copy fasta	STMN3	chr20	63634712	63658424
STMN3_chr20_63634712_63658424	0/0	t0050	1729	1	1	0	0	0	0	copy fasta	STMN3	chr20	63634712	63658424
STMN3_chr20_63634712_63658424	0/0	t0051	1730	1	1	0	0	0	0	copy fasta	STMN3	chr20	63634712	63658424
STMN3_chr20_63634712_63658424	0/0	t0052	1730	1	1	0	0	0	0	copy fasta	STMN3	chr20	63634712	63658424
STMN3_chr20_63634712_63658424	0/0	t0053	1731	1	0	0	1	0	0	copy fasta	STMN3	chr20	63634712	63658424
STMN3_chr20_63634712_63658424	0/0	t0054	1731	1	0	0	0	0	1	copy fasta	STMN3	chr20	63634712	63658424
STMN3_chr20_63634712_63658424	0/0	t0055	1706	1	0	0	0	0	1	copy fasta	STMN3	chr20	63634712	63658424
STMN3_chr20_63634712_63658424	0/0	t0056	1730	1	1	0	0	0	0	copy fasta	STMN3	chr20	63634712	63658424
STMN3_chr20_63634712_63658424	0/0	t0057	1730	1	1	0	0	0	0	copy fasta	STMN3	chr20	63634712	63658424
STMN3_chr20_63634712_63658424	0/0	t0058	1730	1	0	0	0	0	1	copy fasta	STMN3	chr20	63634712	63658424
STMN3_chr20_63634712_63658424	0/0	t0059	1731	1	1	0	0	0	0	copy fasta	STMN3	chr20	63634712	63658424
STMN3_chr20_63634712_63658424	0/0	t0060	1706	1	0	0	1	0	0	copy fasta	STMN3	chr20	63634712	63658424
STMN3_chr20_63634712_63658424	0/0	t0061	1730	1	0	0	0	0	1	copy fasta	STMN3	chr20	63634712	63658424
STMN3_chr20_63634712_63658424	0/0	t0062	1730	1	1	0	0	0	0	copy fasta	STMN3	chr20	63634712	63658424
STMN3_chr20_63634712_63658424	0/0	t0063	1706	1	0	0	1	0	0	copy fasta	STMN3	chr20	63634712	63658424
STMN3_chr20_63634712_63658424	0/0	t0064	1730	1	1	0	0	0	0	copy fasta	STMN3	chr20	63634712	63658424
STMN3_chr20_63634712_63658424	0/0	t0065	1730	1	1	0	0	0	0	copy fasta	STMN3	chr20	63634712	63658424
STMN3_chr20_63634712_63658424	0/0	t0066	1706	1	0	0	1	0	0	copy fasta	STMN3	chr20	63634712	63658424
STMN3_chr20_63634712_63658424	0/0	t0067	1730	1	0	0	1	0	0	copy fasta	STMN3	chr20	63634712	63658424
STMN3_chr20_63634712_63658424	0/0	t0068	1731	1	1	0	0	0	0	copy fasta	STMN3	chr20	63634712	63658424
STMN3_chr20_63634712_63658424	0/0	t0069	1706	1	0	0	1	0	0	copy fasta	STMN3	chr20	63634712	63658424
STMN3_chr20_63634712_63658424	0/0	t0070	1706	1	0	0	1	0	0	copy fasta	STMN3	chr20	63634712	63658424
STMN3_chr20_63634712_63658424	0/0	t0071	1730	1	1	0	0	0	0	copy fasta	STMN3	chr20	63634712	63658424
STMN3_chr20_63634712_63658424	0/0	t0072	1730	1	1	0	0	0	0	copy fasta	STMN3	chr20	63634712	63658424
STMN3_chr20_63634712_63658424	0/0	t0073	1706	1	0	0	1	0	0	copy fasta	STMN3	chr20	63634712	63658424
STMN3_chr20_63634712_63658424	0/0	t0074	1730	1	0	0	0	0	1	copy fasta	STMN3	chr20	63634712	63658424
STMN4_chr8_27230308_27263404	0/1	t0001	1671	192	34	38	86	6	27	copy fasta	STMN4	chr8	27230308	27263404
STMN4_chr8_27230308_27263404	0/0	t0002	1671	66	16	18	25	3	4	copy fasta	STMN4	chr8	27230308	27263404
STMN4_chr8_27230308_27263404	0/0	t0003	1671	63	1	12	42	4	4	copy fasta	STMN4	chr8	27230308	27263404
STMN4_chr8_27230308_27263404	1/0	t0004	1671	56	31	1	17	2	4	copy fasta	STMN4	chr8	27230308	27263404
STMN4_chr8_27230308_27263404	0/0	t0005	1671	41	5	5	28	1	2	copy fasta	STMN4	chr8	27230308	27263404
STMN4_chr8_27230308_27263404	0/0	t0006	1671	6	0	5	0	0	1	copy fasta	STMN4	chr8	27230308	27263404
STMN4_chr8_27230308_27263404	0/0	t0007	1671	3	3	0	0	0	0	copy fasta	STMN4	chr8	27230308	27263404
STMN4_chr8_27230308_27263404	0/0	t0008	1671	2	2	0	0	0	0	copy fasta	STMN4	chr8	27230308	27263404
STMN4_chr8_27230308_27263404	0/0	t0009	1671	1	0	0	0	1	0	copy fasta	STMN4	chr8	27230308	27263404
STMN4_chr8_27230308_27263404	0/0	t0010	1671	1	0	1	0	0	0	copy fasta	STMN4	chr8	27230308	27263404
STMN4_chr8_27230308_27263404	0/0	t0011	1671	1	1	0	0	0	0	copy fasta	STMN4	chr8	27230308	27263404
STMN4_chr8_27230308_27263404	0/0	t0012	1671	1	0	0	0	1	0	copy fasta	STMN4	chr8	27230308	27263404
STMN4_chr8_27230308_27263404	0/0	t0013	1671	1	1	0	0	0	0	copy fasta	STMN4	chr8	27230308	27263404
STMND1_chr6_17097050_17136378	1/1	t0001	706	257	40	56	115	12	32	copy fasta	STMND1	chr6	17097050	17136378
STMND1_chr6_17097050_17136378	0/0	t0002	706	162	46	21	75	6	14	copy fasta	STMND1	chr6	17097050	17136378
STMND1_chr6_17097050_17136378	0/0	t0003	706	3	3	0	0	0	0	copy fasta	STMND1	chr6	17097050	17136378
STMND1_chr6_17097050_17136378	0/0	t0004	706	1	1	0	0	0	0	copy fasta	STMND1	chr6	17097050	17136378
STMND1_chr6_17097050_17136378	0/0	t0005	706	1	0	0	1	0	0	copy fasta	STMND1	chr6	17097050	17136378