JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
STMND1_chr6_17097050_17136378	0/0	t0006	706	1	0	0	1	0	0	copy fasta	STMND1	chr6	17097050	17136378
STMND1_chr6_17097050_17136378	0/0	t0007	706	1	1	0	0	0	0	copy fasta	STMND1	chr6	17097050	17136378
STMND1_chr6_17097050_17136378	0/0	t0008	706	1	0	1	0	0	0	copy fasta	STMND1	chr6	17097050	17136378
STMND1_chr6_17097050_17136378	0/0	t0009	706	1	1	0	0	0	0	copy fasta	STMND1	chr6	17097050	17136378
STMP1_chr7_135657514_135681416	0/0	t0001	2317	97	29	12	48	2	6	copy fasta	STMP1	chr7	135657514	135681416
STMP1_chr7_135657514_135681416	0/1	t0002	2319	95	20	15	43	4	12	copy fasta	STMP1	chr7	135657514	135681416
STMP1_chr7_135657514_135681416	0/0	t0003	2318	59	3	15	35	0	6	copy fasta	STMP1	chr7	135657514	135681416
STMP1_chr7_135657514_135681416	0/0	t0004	2318	26	10	4	5	3	4	copy fasta	STMP1	chr7	135657514	135681416
STMP1_chr7_135657514_135681416	0/0	t0005	2317	19	0	1	13	0	5	copy fasta	STMP1	chr7	135657514	135681416
STMP1_chr7_135657514_135681416	0/0	t0006	2318	18	4	6	3	0	5	copy fasta	STMP1	chr7	135657514	135681416
STMP1_chr7_135657514_135681416	0/0	t0007	2317	13	0	7	6	0	0	copy fasta	STMP1	chr7	135657514	135681416
STMP1_chr7_135657514_135681416	0/0	t0008	2316	12	3	3	1	1	4	copy fasta	STMP1	chr7	135657514	135681416
STMP1_chr7_135657514_135681416	0/0	t0009	2319	9	0	0	7	1	1	copy fasta	STMP1	chr7	135657514	135681416
STMP1_chr7_135657514_135681416	0/0	t0010	2320	8	0	1	2	2	3	copy fasta	STMP1	chr7	135657514	135681416
STMP1_chr7_135657514_135681416	0/0	t0011	2317	6	6	0	0	0	0	copy fasta	STMP1	chr7	135657514	135681416
STMP1_chr7_135657514_135681416	0/0	t0012	2318	4	4	0	0	0	0	copy fasta	STMP1	chr7	135657514	135681416
STMP1_chr7_135657514_135681416	1/0	t0013	2318	3	0	2	0	0	0	copy fasta	STMP1	chr7	135657514	135681416
STMP1_chr7_135657514_135681416	0/0	t0014	2317	2	1	0	1	0	0	copy fasta	STMP1	chr7	135657514	135681416
STMP1_chr7_135657514_135681416	0/0	t0015	2318	2	0	2	0	0	0	copy fasta	STMP1	chr7	135657514	135681416
STMP1_chr7_135657514_135681416	0/0	t0016	2319	1	1	0	0	0	0	copy fasta	STMP1	chr7	135657514	135681416
STMP1_chr7_135657514_135681416	0/0	t0017	2318	1	1	0	0	0	0	copy fasta	STMP1	chr7	135657514	135681416
STMP1_chr7_135657514_135681416	0/0	t0018	2318	1	0	1	0	0	0	copy fasta	STMP1	chr7	135657514	135681416
STMP1_chr7_135657514_135681416	0/0	t0019	2328	1	1	0	0	0	0	copy fasta	STMP1	chr7	135657514	135681416
STMP1_chr7_135657514_135681416	0/0	t0020	2319	1	0	0	0	1	0	copy fasta	STMP1	chr7	135657514	135681416
STMP1_chr7_135657514_135681416	0/0	t0021	2318	1	1	0	0	0	0	copy fasta	STMP1	chr7	135657514	135681416
STMP1_chr7_135657514_135681416	0/0	t0022	2318	1	1	0	0	0	0	copy fasta	STMP1	chr7	135657514	135681416
STMP1_chr7_135657514_135681416	0/0	t0023	2317	1	0	0	1	0	0	copy fasta	STMP1	chr7	135657514	135681416
STMP1_chr7_135657514_135681416	0/0	t0024	2318	1	1	0	0	0	0	copy fasta	STMP1	chr7	135657514	135681416
STMP1_chr7_135657514_135681416	0/0	t0025	2316	1	1	0	0	0	0	copy fasta	STMP1	chr7	135657514	135681416
STMP1_chr7_135657514_135681416	0/0	t0026	2317	1	1	0	0	0	0	copy fasta	STMP1	chr7	135657514	135681416
STMP1_chr7_135657514_135681416	0/0	t0027	2317	1	0	0	1	0	0	copy fasta	STMP1	chr7	135657514	135681416
STMP1_chr7_135657514_135681416	0/0	t0028	2317	1	0	1	0	0	0	copy fasta	STMP1	chr7	135657514	135681416
STMP1_chr7_135657514_135681416	0/0	t0029	2317	1	0	0	1	0	0	copy fasta	STMP1	chr7	135657514	135681416
STMP1_chr7_135657514_135681416	0/0	t0030	2317	1	1	0	0	0	0	copy fasta	STMP1	chr7	135657514	135681416
STMP1_chr7_135657514_135681416	0/0	t0031	2317	1	1	0	0	0	0	copy fasta	STMP1	chr7	135657514	135681416
STMP1_chr7_135657514_135681416	0/0	t0032	2317	1	0	1	0	0	0	copy fasta	STMP1	chr7	135657514	135681416
STMP1_chr7_135657514_135681416	0/0	t0033	2316	1	0	1	0	0	0	copy fasta	STMP1	chr7	135657514	135681416
STMP1_chr7_135657514_135681416	0/0	t0034	2318	1	0	0	1	0	0	copy fasta	STMP1	chr7	135657514	135681416
STN1_chr10_103872569_103923184	0/1	t0001	5266	61	7	12	25	4	12	copy fasta	STN1	chr10	103872569	103923184
STN1_chr10_103872569_103923184	0/0	t0002	5266	53	1	2	48	0	2	copy fasta	STN1	chr10	103872569	103923184
STN1_chr10_103872569_103923184	0/0	t0003	5270	52	6	11	23	3	9	copy fasta	STN1	chr10	103872569	103923184
STN1_chr10_103872569_103923184	0/0	t0004	5270	45	8	5	29	0	3	copy fasta	STN1	chr10	103872569	103923184
STN1_chr10_103872569_103923184	0/0	t0005	5270	19	0	6	13	0	0	copy fasta	STN1	chr10	103872569	103923184
STN1_chr10_103872569_103923184	0/0	t0006	5270	16	3	8	0	4	1	copy fasta	STN1	chr10	103872569	103923184
STN1_chr10_103872569_103923184	0/0	t0007	5266	11	4	1	2	1	3	copy fasta	STN1	chr10	103872569	103923184
STN1_chr10_103872569_103923184	0/0	t0008	5266	11	11	0	0	0	0	copy fasta	STN1	chr10	103872569	103923184
STN1_chr10_103872569_103923184	0/0	t0009	5266	9	9	0	0	0	0	copy fasta	STN1	chr10	103872569	103923184
STN1_chr10_103872569_103923184	0/0	t0010	5266	8	2	5	0	0	1	copy fasta	STN1	chr10	103872569	103923184
STN1_chr10_103872569_103923184	0/0	t0011	5263	5	4	1	0	0	0	copy fasta	STN1	chr10	103872569	103923184
STN1_chr10_103872569_103923184	0/0	t0012	5273	5	0	0	5	0	0	copy fasta	STN1	chr10	103872569	103923184