JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
STN1_chr10_103872569_103923184	0/0	t0063	5273	1	1	0	0	0	0	copy fasta	STN1	chr10	103872569	103923184
STN1_chr10_103872569_103923184	0/0	t0064	5270	1	0	0	1	0	0	copy fasta	STN1	chr10	103872569	103923184
STN1_chr10_103872569_103923184	0/0	t0065	5270	1	0	0	0	0	1	copy fasta	STN1	chr10	103872569	103923184
STN1_chr10_103872569_103923184	0/0	t0066	5270	1	0	0	0	0	1	copy fasta	STN1	chr10	103872569	103923184
STN1_chr10_103872569_103923184	0/0	t0067	5270	1	0	0	0	0	1	copy fasta	STN1	chr10	103872569	103923184
STN1_chr10_103872569_103923184	0/0	t0068	5270	1	0	0	1	0	0	copy fasta	STN1	chr10	103872569	103923184
STN1_chr10_103872569_103923184	0/0	t0069	5270	1	0	0	1	0	0	copy fasta	STN1	chr10	103872569	103923184
STN1_chr10_103872569_103923184	0/0	t0070	5270	1	0	0	1	0	0	copy fasta	STN1	chr10	103872569	103923184
STN1_chr10_103872569_103923184	0/0	t0071	5266	1	0	1	0	0	0	copy fasta	STN1	chr10	103872569	103923184
STOML1_chr15_73973926_73997295	1/1	t0001	5084	149	8	43	74	9	13	copy fasta	STOML1	chr15	73973926	73997295
STOML1_chr15_73973926_73997295	0/0	t0002	5083	50	12	4	19	4	11	copy fasta	STOML1	chr15	73973926	73997295
STOML1_chr15_73973926_73997295	0/0	t0003	5083	41	20	2	16	0	3	copy fasta	STOML1	chr15	73973926	73997295
STOML1_chr15_73973926_73997295	0/0	t0004	5084	37	0	5	29	0	3	copy fasta	STOML1	chr15	73973926	73997295
STOML1_chr15_73973926_73997295	0/0	t0005	5084	20	8	2	9	0	1	copy fasta	STOML1	chr15	73973926	73997295
STOML1_chr15_73973926_73997295	0/0	t0006	5085	20	1	6	11	0	2	copy fasta	STOML1	chr15	73973926	73997295
STOML1_chr15_73973926_73997295	0/0	t0007	5083	7	5	2	0	0	0	copy fasta	STOML1	chr15	73973926	73997295
STOML1_chr15_73973926_73997295	0/0	t0008	5083	6	5	1	0	0	0	copy fasta	STOML1	chr15	73973926	73997295
STOML1_chr15_73973926_73997295	0/0	t0009	5085	6	0	1	5	0	0	copy fasta	STOML1	chr15	73973926	73997295
STOML1_chr15_73973926_73997295	0/0	t0010	5083	6	6	0	0	0	0	copy fasta	STOML1	chr15	73973926	73997295
STOML1_chr15_73973926_73997295	0/0	t0011	5083	5	0	0	5	0	0	copy fasta	STOML1	chr15	73973926	73997295
STOML1_chr15_73973926_73997295	0/0	t0012	5083	5	2	2	0	0	1	copy fasta	STOML1	chr15	73973926	73997295
STOML1_chr15_73973926_73997295	0/0	t0013	5084	4	2	2	0	0	0	copy fasta	STOML1	chr15	73973926	73997295
STOML1_chr15_73973926_73997295	0/0	t0014	5083	4	4	0	0	0	0	copy fasta	STOML1	chr15	73973926	73997295
STOML1_chr15_73973926_73997295	0/0	t0015	5083	4	0	2	0	0	2	copy fasta	STOML1	chr15	73973926	73997295
STOML1_chr15_73973926_73997295	0/0	t0016	5082	3	3	0	0	0	0	copy fasta	STOML1	chr15	73973926	73997295
STOML1_chr15_73973926_73997295	0/0	t0017	5084	3	0	2	0	1	0	copy fasta	STOML1	chr15	73973926	73997295
STOML1_chr15_73973926_73997295	0/0	t0018	5084	3	1	1	0	0	1	copy fasta	STOML1	chr15	73973926	73997295
STOML1_chr15_73973926_73997295	0/0	t0019	5083	2	0	2	0	0	0	copy fasta	STOML1	chr15	73973926	73997295
STOML1_chr15_73973926_73997295	0/0	t0020	5084	2	0	0	2	0	0	copy fasta	STOML1	chr15	73973926	73997295
STOML1_chr15_73973926_73997295	0/0	t0021	5082	2	0	0	0	0	2	copy fasta	STOML1	chr15	73973926	73997295
STOML1_chr15_73973926_73997295	0/0	t0022	5085	2	0	0	2	0	0	copy fasta	STOML1	chr15	73973926	73997295
STOML1_chr15_73973926_73997295	0/0	t0023	5084	2	0	0	2	0	0	copy fasta	STOML1	chr15	73973926	73997295
STOML1_chr15_73973926_73997295	0/0	t0024	5084	2	0	0	0	0	2	copy fasta	STOML1	chr15	73973926	73997295
STOML1_chr15_73973926_73997295	0/0	t0025	5085	2	2	0	0	0	0	copy fasta	STOML1	chr15	73973926	73997295
STOML1_chr15_73973926_73997295	0/0	t0026	5084	2	2	0	0	0	0	copy fasta	STOML1	chr15	73973926	73997295
STOML1_chr15_73973926_73997295	0/0	t0027	5083	2	1	1	0	0	0	copy fasta	STOML1	chr15	73973926	73997295
STOML1_chr15_73973926_73997295	0/0	t0028	5083	1	0	1	0	0	0	copy fasta	STOML1	chr15	73973926	73997295
STOML1_chr15_73973926_73997295	0/0	t0029	5083	1	1	0	0	0	0	copy fasta	STOML1	chr15	73973926	73997295
STOML1_chr15_73973926_73997295	0/0	t0030	5085	1	1	0	0	0	0	copy fasta	STOML1	chr15	73973926	73997295
STOML1_chr15_73973926_73997295	0/0	t0031	5085	1	1	0	0	0	0	copy fasta	STOML1	chr15	73973926	73997295
STOML1_chr15_73973926_73997295	0/0	t0032	5085	1	1	0	0	0	0	copy fasta	STOML1	chr15	73973926	73997295
STOML1_chr15_73973926_73997295	0/0	t0033	5085	1	1	0	0	0	0	copy fasta	STOML1	chr15	73973926	73997295
STOML1_chr15_73973926_73997295	0/0	t0034	5084	1	1	0	0	0	0	copy fasta	STOML1	chr15	73973926	73997295
STOML1_chr15_73973926_73997295	0/0	t0035	5085	1	1	0	0	0	0	copy fasta	STOML1	chr15	73973926	73997295
STOML1_chr15_73973926_73997295	0/0	t0036	5084	1	1	0	0	0	0	copy fasta	STOML1	chr15	73973926	73997295
STOML1_chr15_73973926_73997295	0/0	t0037	5084	1	0	0	1	0	0	copy fasta	STOML1	chr15	73973926	73997295
STOML1_chr15_73973926_73997295	0/0	t0038	5084	1	1	0	0	0	0	copy fasta	STOML1	chr15	73973926	73997295
STOML1_chr15_73973926_73997295	0/0	t0039	5085	1	0	0	1	0	0	copy fasta	STOML1	chr15	73973926	73997295
STOML1_chr15_73973926_73997295	0/0	t0040	5084	1	0	0	1	0	0	copy fasta	STOML1	chr15	73973926	73997295
STOML1_chr15_73973926_73997295	0/0	t0041	5083	1	0	0	0	0	1	copy fasta	STOML1	chr15	73973926	73997295