Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
BMP6_chr6_7721099_7886728	0/0	t0007	2232	5	0	0	3	0	2	copy fasta	BMP6	chr6	7721099	7886728
BMP6_chr6_7721099_7886728	0/0	t0008	2221	4	4	0	0	0	0	copy fasta	BMP6	chr6	7721099	7886728
BMP6_chr6_7721099_7886728	0/0	t0009	2243	4	4	0	0	0	0	copy fasta	BMP6	chr6	7721099	7886728
BMP6_chr6_7721099_7886728	0/0	t0010	2239	3	0	0	3	0	0	copy fasta	BMP6	chr6	7721099	7886728
BMP6_chr6_7721099_7886728	0/0	t0011	2232	3	3	0	0	0	0	copy fasta	BMP6	chr6	7721099	7886728
BMP6_chr6_7721099_7886728	0/0	t0012	2243	3	1	1	0	0	1	copy fasta	BMP6	chr6	7721099	7886728
BMP6_chr6_7721099_7886728	0/0	t0013	2243	3	3	0	0	0	0	copy fasta	BMP6	chr6	7721099	7886728
BMP6_chr6_7721099_7886728	0/0	t0014	2243	3	2	1	0	0	0	copy fasta	BMP6	chr6	7721099	7886728
BMP6_chr6_7721099_7886728	0/0	t0015	2233	2	2	0	0	0	0	copy fasta	BMP6	chr6	7721099	7886728
BMP6_chr6_7721099_7886728	0/0	t0016	2233	2	1	1	0	0	0	copy fasta	BMP6	chr6	7721099	7886728
BMP6_chr6_7721099_7886728	0/0	t0017	2232	2	1	1	0	0	0	copy fasta	BMP6	chr6	7721099	7886728
BMP6_chr6_7721099_7886728	0/0	t0018	2243	2	2	0	0	0	0	copy fasta	BMP6	chr6	7721099	7886728
BMP6_chr6_7721099_7886728	0/0	t0019	2243	2	2	0	0	0	0	copy fasta	BMP6	chr6	7721099	7886728
BMP6_chr6_7721099_7886728	0/0	t0020	2233	2	2	0	0	0	0	copy fasta	BMP6	chr6	7721099	7886728
BMP6_chr6_7721099_7886728	0/0	t0021	2243	1	0	0	1	0	0	copy fasta	BMP6	chr6	7721099	7886728
BMP6_chr6_7721099_7886728	0/0	t0022	2243	1	1	0	0	0	0	copy fasta	BMP6	chr6	7721099	7886728
BMP6_chr6_7721099_7886728	0/0	t0023	2232	1	1	0	0	0	0	copy fasta	BMP6	chr6	7721099	7886728
BMP6_chr6_7721099_7886728	0/0	t0024	2232	1	1	0	0	0	0	copy fasta	BMP6	chr6	7721099	7886728
BMP6_chr6_7721099_7886728	0/0	t0025	2243	1	1	0	0	0	0	copy fasta	BMP6	chr6	7721099	7886728
BMP6_chr6_7721099_7886728	0/0	t0026	2233	1	1	0	0	0	0	copy fasta	BMP6	chr6	7721099	7886728
BMP6_chr6_7721099_7886728	0/0	t0027	2243	1	1	0	0	0	0	copy fasta	BMP6	chr6	7721099	7886728
BMP6_chr6_7721099_7886728	0/0	t0028	2243	1	0	1	0	0	0	copy fasta	BMP6	chr6	7721099	7886728
BMP6_chr6_7721099_7886728	0/0	t0029	2243	1	0	1	0	0	0	copy fasta	BMP6	chr6	7721099	7886728
BMP6_chr6_7721099_7886728	0/0	t0030	2243	1	0	1	0	0	0	copy fasta	BMP6	chr6	7721099	7886728
BMP6_chr6_7721099_7886728	0/0	t0031	2243	1	0	1	0	0	0	copy fasta	BMP6	chr6	7721099	7886728
BMP6_chr6_7721099_7886728	0/0	t0032	2243	1	0	1	0	0	0	copy fasta	BMP6	chr6	7721099	7886728
BMP6_chr6_7721099_7886728	0/0	t0033	2243	1	0	0	1	0	0	copy fasta	BMP6	chr6	7721099	7886728
BMP6_chr6_7721099_7886728	0/0	t0034	2221	1	1	0	0	0	0	copy fasta	BMP6	chr6	7721099	7886728
BMP6_chr6_7721099_7886728	0/0	t0035	2232	1	1	0	0	0	0	copy fasta	BMP6	chr6	7721099	7886728
BMP6_chr6_7721099_7886728	0/0	t0036	2233	1	1	0	0	0	0	copy fasta	BMP6	chr6	7721099	7886728
BMP6_chr6_7721099_7886728	0/0	t0037	2232	1	1	0	0	0	0	copy fasta	BMP6	chr6	7721099	7886728
BMP6_chr6_7721099_7886728	0/0	t0038	2243	1	1	0	0	0	0	copy fasta	BMP6	chr6	7721099	7886728
BMP6_chr6_7721099_7886728	0/0	t0039	2232	1	1	0	0	0	0	copy fasta	BMP6	chr6	7721099	7886728
BMP6_chr6_7721099_7886728	0/0	t0040	2232	1	1	0	0	0	0	copy fasta	BMP6	chr6	7721099	7886728
BMP6_chr6_7721099_7886728	0/0	t0041	2243	1	1	0	0	0	0	copy fasta	BMP6	chr6	7721099	7886728
BMP7_chr20_57163753_57271641	0/0	t0001	2726	109	35	27	21	6	20	copy fasta	BMP7	chr20	57163753	57271641
BMP7_chr20_57163753_57271641	0/0	t0002	2725	74	6	19	35	6	8	copy fasta	BMP7	chr20	57163753	57271641
BMP7_chr20_57163753_57271641	1/0	t0003	2726	20	15	4	0	0	0	copy fasta	BMP7	chr20	57163753	57271641
BMP7_chr20_57163753_57271641	0/0	t0004	2726	11	10	1	0	0	0	copy fasta	BMP7	chr20	57163753	57271641
BMP7_chr20_57163753_57271641	0/0	t0005	2726	10	0	3	4	1	2	copy fasta	BMP7	chr20	57163753	57271641
BMP7_chr20_57163753_57271641	0/0	t0006	2726	8	6	2	0	0	0	copy fasta	BMP7	chr20	57163753	57271641
BMP7_chr20_57163753_57271641	0/0	t0007	2725	7	1	4	0	0	2	copy fasta	BMP7	chr20	57163753	57271641
BMP7_chr20_57163753_57271641	0/0	t0008	2726	4	0	0	4	0	0	copy fasta	BMP7	chr20	57163753	57271641
BMP7_chr20_57163753_57271641	0/0	t0009	2724	3	3	0	0	0	0	copy fasta	BMP7	chr20	57163753	57271641
BMP7_chr20_57163753_57271641	0/0	t0010	2726	2	0	0	2	0	0	copy fasta	BMP7	chr20	57163753	57271641
BMP7_chr20_57163753_57271641	0/0	t0011	2725	2	2	0	0	0	0	copy fasta	BMP7	chr20	57163753	57271641
BMP7_chr20_57163753_57271641	0/0	t0012	2725	2	2	0	0	0	0	copy fasta	BMP7	chr20	57163753	57271641
BMP7_chr20_57163753_57271641	0/0	t0013	2724	2	2	0	0	0	0	copy fasta	BMP7	chr20	57163753	57271641
BMP7_chr20_57163753_57271641	0/0	t0014	2726	2	2	0	0	0	0	copy fasta	BMP7	chr20	57163753	57271641
BMP7_chr20_57163753_57271641	0/0	t0015	2726	2	0	0	2	0	0	copy fasta	BMP7	chr20	57163753	57271641