JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
STOML1_chr15_73973926_73997295	0/0	t0042	5083	1	0	0	1	0	0	copy fasta	STOML1	chr15	73973926	73997295
STOML1_chr15_73973926_73997295	0/0	t0043	5084	1	0	0	1	0	0	copy fasta	STOML1	chr15	73973926	73997295
STOML1_chr15_73973926_73997295	0/0	t0044	5084	1	0	0	1	0	0	copy fasta	STOML1	chr15	73973926	73997295
STOML1_chr15_73973926_73997295	0/0	t0045	5083	1	1	0	0	0	0	copy fasta	STOML1	chr15	73973926	73997295
STOML1_chr15_73973926_73997295	0/0	t0046	5083	1	0	0	1	0	0	copy fasta	STOML1	chr15	73973926	73997295
STOML1_chr15_73973926_73997295	0/0	t0047	5084	1	0	0	1	0	0	copy fasta	STOML1	chr15	73973926	73997295
STOML1_chr15_73973926_73997295	0/0	t0048	5084	1	0	0	1	0	0	copy fasta	STOML1	chr15	73973926	73997295
STOML1_chr15_73973926_73997295	0/0	t0049	5084	1	0	0	1	0	0	copy fasta	STOML1	chr15	73973926	73997295
STOML1_chr15_73973926_73997295	0/0	t0050	5083	1	0	0	1	0	0	copy fasta	STOML1	chr15	73973926	73997295
STOML1_chr15_73973926_73997295	0/0	t0051	5084	1	0	1	0	0	0	copy fasta	STOML1	chr15	73973926	73997295
STOML1_chr15_73973926_73997295	0/0	t0052	5085	1	0	0	0	0	1	copy fasta	STOML1	chr15	73973926	73997295
STOML1_chr15_73973926_73997295	0/0	t0053	5084	1	1	0	0	0	0	copy fasta	STOML1	chr15	73973926	73997295
STOML1_chr15_73973926_73997295	0/0	t0054	5084	1	0	0	1	0	0	copy fasta	STOML1	chr15	73973926	73997295
STOML1_chr15_73973926_73997295	0/0	t0055	5085	1	0	0	1	0	0	copy fasta	STOML1	chr15	73973926	73997295
STOML1_chr15_73973926_73997295	0/0	t0056	5084	1	0	0	0	0	1	copy fasta	STOML1	chr15	73973926	73997295
STOML1_chr15_73973926_73997295	0/0	t0057	5083	1	1	0	0	0	0	copy fasta	STOML1	chr15	73973926	73997295
STOML1_chr15_73973926_73997295	0/0	t0058	5083	1	0	0	1	0	0	copy fasta	STOML1	chr15	73973926	73997295
STOML1_chr15_73973926_73997295	0/0	t0059	5084	1	1	0	0	0	0	copy fasta	STOML1	chr15	73973926	73997295
STOML1_chr15_73973926_73997295	0/0	t0060	5084	1	1	0	0	0	0	copy fasta	STOML1	chr15	73973926	73997295
STOML2_chr9_35094778_35108131	0/1	t0001	295	411	82	68	202	14	44	copy fasta	STOML2	chr9	35094778	35108131
STOML2_chr9_35094778_35108131	1/0	t0002	295	10	9	0	0	0	0	copy fasta	STOML2	chr9	35094778	35108131
STOML2_chr9_35094778_35108131	0/0	t0003	295	4	0	0	4	0	0	copy fasta	STOML2	chr9	35094778	35108131
STOML2_chr9_35094778_35108131	0/0	t0004	295	3	3	0	0	0	0	copy fasta	STOML2	chr9	35094778	35108131
STOML3_chr13_38960925_38995831	1/0	t0001	1011	180	35	36	85	6	17	copy fasta	STOML3	chr13	38960925	38995831
STOML3_chr13_38960925_38995831	0/1	t0002	1010	111	17	19	64	2	8	copy fasta	STOML3	chr13	38960925	38995831
STOML3_chr13_38960925_38995831	0/0	t0003	1011	61	11	23	8	1	18	copy fasta	STOML3	chr13	38960925	38995831
STOML3_chr13_38960925_38995831	0/0	t0004	1011	21	19	2	0	0	0	copy fasta	STOML3	chr13	38960925	38995831
STOML3_chr13_38960925_38995831	0/0	t0005	1010	8	0	2	0	3	3	copy fasta	STOML3	chr13	38960925	38995831
STOML3_chr13_38960925_38995831	0/0	t0006	1010	5	5	0	0	0	0	copy fasta	STOML3	chr13	38960925	38995831
STOML3_chr13_38960925_38995831	0/0	t0007	1011	4	4	0	0	0	0	copy fasta	STOML3	chr13	38960925	38995831
STOML3_chr13_38960925_38995831	0/0	t0008	1011	3	3	0	0	0	0	copy fasta	STOML3	chr13	38960925	38995831
STOML3_chr13_38960925_38995831	0/0	t0009	1010	1	0	0	1	0	0	copy fasta	STOML3	chr13	38960925	38995831
STOML3_chr13_38960925_38995831	0/0	t0010	1011	1	0	0	0	0	1	copy fasta	STOML3	chr13	38960925	38995831
STOML3_chr13_38960925_38995831	0/0	t0011	1010	1	0	0	0	0	1	copy fasta	STOML3	chr13	38960925	38995831
STOM_chr9_121333987_121375250	0/1	t0001	2279	202	45	32	94	14	16	copy fasta	STOM	chr9	121333987	121375250
STOM_chr9_121333987_121375250	0/0	t0002	2279	53	10	7	34	0	2	copy fasta	STOM	chr9	121333987	121375250
STOM_chr9_121333987_121375250	0/0	t0003	2280	51	0	13	29	0	9	copy fasta	STOM	chr9	121333987	121375250
STOM_chr9_121333987_121375250	0/0	t0004	2280	25	3	12	5	2	3	copy fasta	STOM	chr9	121333987	121375250
STOM_chr9_121333987_121375250	1/0	t0005	2279	24	10	8	1	1	3	copy fasta	STOM	chr9	121333987	121375250
STOM_chr9_121333987_121375250	0/0	t0006	2279	11	11	0	0	0	0	copy fasta	STOM	chr9	121333987	121375250
STOM_chr9_121333987_121375250	0/0	t0007	2280	5	5	0	0	0	0	copy fasta	STOM	chr9	121333987	121375250
STOM_chr9_121333987_121375250	0/0	t0008	2280	3	3	0	0	0	0	copy fasta	STOM	chr9	121333987	121375250
STOM_chr9_121333987_121375250	0/0	t0009	2279	2	0	0	2	0	0	copy fasta	STOM	chr9	121333987	121375250
STOM_chr9_121333987_121375250	0/0	t0010	2280	2	2	0	0	0	0	copy fasta	STOM	chr9	121333987	121375250
STOM_chr9_121333987_121375250	0/0	t0011	2279	2	0	0	2	0	0	copy fasta	STOM	chr9	121333987	121375250
STOM_chr9_121333987_121375250	0/0	t0012	2279	2	0	2	0	0	0	copy fasta	STOM	chr9	121333987	121375250
STOM_chr9_121333987_121375250	0/0	t0013	2280	1	0	0	0	1	0	copy fasta	STOM	chr9	121333987	121375250
STOM_chr9_121333987_121375250	0/0	t0014	2279	1	0	0	0	0	1	copy fasta	STOM	chr9	121333987	121375250
STOM_chr9_121333987_121375250	0/0	t0015	2279	1	1	0	0	0	0	copy fasta	STOM	chr9	121333987	121375250
STOM_chr9_121333987_121375250	0/0	t0016	2279	1	0	0	1	0	0	copy fasta	STOM	chr9	121333987	121375250