JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
STON1_chr2_48525154_48603513	0/1	t0001	3322	133	18	35	49	7	23	copy fasta	STON1	chr2	48525154	48603513
STON1_chr2_48525154_48603513	0/0	t0002	3322	87	30	10	42	1	4	copy fasta	STON1	chr2	48525154	48603513
STON1_chr2_48525154_48603513	0/0	t0003	3322	39	0	5	29	0	5	copy fasta	STON1	chr2	48525154	48603513
STON1_chr2_48525154_48603513	0/0	t0004	3322	35	10	12	0	7	6	copy fasta	STON1	chr2	48525154	48603513
STON1_chr2_48525154_48603513	1/0	t0005	3322	10	7	1	0	0	1	copy fasta	STON1	chr2	48525154	48603513
STON1_chr2_48525154_48603513	0/0	t0006	3322	9	1	7	0	1	0	copy fasta	STON1	chr2	48525154	48603513
STON1_chr2_48525154_48603513	0/0	t0007	3322	8	1	0	7	0	0	copy fasta	STON1	chr2	48525154	48603513
STON1_chr2_48525154_48603513	0/0	t0008	3322	6	0	0	6	0	0	copy fasta	STON1	chr2	48525154	48603513
STON1_chr2_48525154_48603513	0/0	t0009	3322	6	0	0	6	0	0	copy fasta	STON1	chr2	48525154	48603513
STON1_chr2_48525154_48603513	0/0	t0010	3322	6	4	2	0	0	0	copy fasta	STON1	chr2	48525154	48603513
STON1_chr2_48525154_48603513	0/0	t0011	3322	5	5	0	0	0	0	copy fasta	STON1	chr2	48525154	48603513
STON1_chr2_48525154_48603513	0/0	t0012	3322	4	4	0	0	0	0	copy fasta	STON1	chr2	48525154	48603513
STON1_chr2_48525154_48603513	0/0	t0013	3322	2	0	0	2	0	0	copy fasta	STON1	chr2	48525154	48603513
STON1_chr2_48525154_48603513	0/0	t0014	3322	2	0	2	0	0	0	copy fasta	STON1	chr2	48525154	48603513
STON1_chr2_48525154_48603513	0/0	t0015	3322	2	2	0	0	0	0	copy fasta	STON1	chr2	48525154	48603513
STON1_chr2_48525154_48603513	0/0	t0016	3322	2	0	0	2	0	0	copy fasta	STON1	chr2	48525154	48603513
STON1_chr2_48525154_48603513	0/0	t0017	3322	2	2	0	0	0	0	copy fasta	STON1	chr2	48525154	48603513
STON1_chr2_48525154_48603513	0/0	t0018	3322	1	0	0	1	0	0	copy fasta	STON1	chr2	48525154	48603513
STON1_chr2_48525154_48603513	0/0	t0019	3322	1	0	0	1	0	0	copy fasta	STON1	chr2	48525154	48603513
STON1_chr2_48525154_48603513	0/0	t0020	3322	1	1	0	0	0	0	copy fasta	STON1	chr2	48525154	48603513
STON1_chr2_48525154_48603513	0/0	t0021	3322	1	1	0	0	0	0	copy fasta	STON1	chr2	48525154	48603513
STON1_chr2_48525154_48603513	0/0	t0022	3322	1	0	0	1	0	0	copy fasta	STON1	chr2	48525154	48603513
STON1_chr2_48525154_48603513	0/0	t0023	3322	1	1	0	0	0	0	copy fasta	STON1	chr2	48525154	48603513
STON1_chr2_48525154_48603513	0/0	t0024	3322	1	1	0	0	0	0	copy fasta	STON1	chr2	48525154	48603513
STON1_chr2_48525154_48603513	0/0	t0025	3322	1	0	0	0	0	1	copy fasta	STON1	chr2	48525154	48603513
STON1_chr2_48525154_48603513	0/0	t0026	3322	1	0	1	0	0	0	copy fasta	STON1	chr2	48525154	48603513
STON1_chr2_48525154_48603513	0/0	t0027	3322	1	0	1	0	0	0	copy fasta	STON1	chr2	48525154	48603513
STON1_chr2_48525154_48603513	0/0	t0028	3322	1	1	0	0	0	0	copy fasta	STON1	chr2	48525154	48603513
STON1_chr2_48525154_48603513	0/0	t0029	3322	1	0	0	0	0	1	copy fasta	STON1	chr2	48525154	48603513
STON1_chr2_48525154_48603513	0/0	t0030	3322	1	1	0	0	0	0	copy fasta	STON1	chr2	48525154	48603513
STON1_chr2_48525154_48603513	0/0	t0031	3322	1	0	0	0	0	1	copy fasta	STON1	chr2	48525154	48603513
STON1_chr2_48525154_48603513	0/0	t0032	3322	1	1	0	0	0	0	copy fasta	STON1	chr2	48525154	48603513
STON1_chr2_48525154_48603513	0/0	t0033	3322	1	1	0	0	0	0	copy fasta	STON1	chr2	48525154	48603513
STON1_chr2_48525154_48603513	0/0	t0034	3322	1	1	0	0	0	0	copy fasta	STON1	chr2	48525154	48603513
STON1_chr2_48525154_48603513	0/0	t0035	3322	1	1	0	0	0	0	copy fasta	STON1	chr2	48525154	48603513
STON2_chr14_81255652_81405324	0/0	t0001	8007	41	1	8	27	2	3	copy fasta	STON2	chr14	81255652	81405324
STON2_chr14_81255652_81405324	0/0	t0002	8013	30	1	12	8	1	8	copy fasta	STON2	chr14	81255652	81405324
STON2_chr14_81255652_81405324	1/0	t0003	8007	17	0	0	16	0	0	copy fasta	STON2	chr14	81255652	81405324
STON2_chr14_81255652_81405324	0/0	t0004	7998	14	7	3	2	1	1	copy fasta	STON2	chr14	81255652	81405324
STON2_chr14_81255652_81405324	0/0	t0005	7991	11	5	3	0	1	2	copy fasta	STON2	chr14	81255652	81405324
STON2_chr14_81255652_81405324	0/0	t0006	8000	10	1	3	5	0	1	copy fasta	STON2	chr14	81255652	81405324
STON2_chr14_81255652_81405324	0/0	t0007	7997	8	7	1	0	0	0	copy fasta	STON2	chr14	81255652	81405324
STON2_chr14_81255652_81405324	0/0	t0008	8014	6	2	1	1	0	2	copy fasta	STON2	chr14	81255652	81405324
STON2_chr14_81255652_81405324	0/0	t0009	8014	6	0	1	4	0	1	copy fasta	STON2	chr14	81255652	81405324
STON2_chr14_81255652_81405324	0/1	t0010	8016	6	0	0	4	0	1	copy fasta	STON2	chr14	81255652	81405324
STON2_chr14_81255652_81405324	0/0	t0011	8013	5	0	0	5	0	0	copy fasta	STON2	chr14	81255652	81405324
STON2_chr14_81255652_81405324	0/0	t0012	8007	5	1	4	0	0	0	copy fasta	STON2	chr14	81255652	81405324
STON2_chr14_81255652_81405324	0/0	t0013	8008	5	0	0	3	0	2	copy fasta	STON2	chr14	81255652	81405324
STON2_chr14_81255652_81405324	0/0	t0014	7997	4	3	1	0	0	0	copy fasta	STON2	chr14	81255652	81405324
STON2_chr14_81255652_81405324	0/0	t0015	7998	4	4	0	0	0	0	copy fasta	STON2	chr14	81255652	81405324