JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
STON2_chr14_81255652_81405324	0/0	t0066	8014	1	0	0	1	0	0	copy fasta	STON2	chr14	81255652	81405324
STON2_chr14_81255652_81405324	0/0	t0067	8013	1	0	1	0	0	0	copy fasta	STON2	chr14	81255652	81405324
STON2_chr14_81255652_81405324	0/0	t0068	8015	1	1	0	0	0	0	copy fasta	STON2	chr14	81255652	81405324
STON2_chr14_81255652_81405324	0/0	t0069	8016	1	1	0	0	0	0	copy fasta	STON2	chr14	81255652	81405324
STON2_chr14_81255652_81405324	0/0	t0070	8015	1	0	0	1	0	0	copy fasta	STON2	chr14	81255652	81405324
STON2_chr14_81255652_81405324	0/0	t0071	8013	1	0	0	1	0	0	copy fasta	STON2	chr14	81255652	81405324
STON2_chr14_81255652_81405324	0/0	t0072	8007	1	0	1	0	0	0	copy fasta	STON2	chr14	81255652	81405324
STON2_chr14_81255652_81405324	0/0	t0073	8006	1	0	1	0	0	0	copy fasta	STON2	chr14	81255652	81405324
STON2_chr14_81255652_81405324	0/0	t0074	8007	1	0	1	0	0	0	copy fasta	STON2	chr14	81255652	81405324
STON2_chr14_81255652_81405324	0/0	t0075	8007	1	0	0	1	0	0	copy fasta	STON2	chr14	81255652	81405324
STON2_chr14_81255652_81405324	0/0	t0076	8007	1	0	1	0	0	0	copy fasta	STON2	chr14	81255652	81405324
STON2_chr14_81255652_81405324	0/0	t0077	7997	1	0	0	0	0	1	copy fasta	STON2	chr14	81255652	81405324
STON2_chr14_81255652_81405324	0/0	t0078	8007	1	0	0	1	0	0	copy fasta	STON2	chr14	81255652	81405324
STON2_chr14_81255652_81405324	0/0	t0079	8005	1	0	0	0	1	0	copy fasta	STON2	chr14	81255652	81405324
STON2_chr14_81255652_81405324	0/0	t0080	7997	1	1	0	0	0	0	copy fasta	STON2	chr14	81255652	81405324
STON2_chr14_81255652_81405324	0/0	t0081	7991	1	1	0	0	0	0	copy fasta	STON2	chr14	81255652	81405324
STON2_chr14_81255652_81405324	0/0	t0082	7998	1	1	0	0	0	0	copy fasta	STON2	chr14	81255652	81405324
STON2_chr14_81255652_81405324	0/0	t0083	7998	1	1	0	0	0	0	copy fasta	STON2	chr14	81255652	81405324
STOX1_chr10_68822531_68898060	1/1	t0001	418	295	74	53	117	9	40	copy fasta	STOX1	chr10	68822531	68898060
STOX1_chr10_68822531_68898060	0/0	t0002	418	7	6	1	0	0	0	copy fasta	STOX1	chr10	68822531	68898060
STOX1_chr10_68822531_68898060	0/0	t0003	418	3	0	0	3	0	0	copy fasta	STOX1	chr10	68822531	68898060
STOX1_chr10_68822531_68898060	0/0	t0004	418	3	3	0	0	0	0	copy fasta	STOX1	chr10	68822531	68898060
STOX1_chr10_68822531_68898060	0/0	t0005	418	1	1	0	0	0	0	copy fasta	STOX1	chr10	68822531	68898060
STOX1_chr10_68822531_68898060	0/0	t0006	418	1	0	0	1	0	0	copy fasta	STOX1	chr10	68822531	68898060
STOX1_chr10_68822531_68898060	0/0	t0007	418	1	0	0	0	1	0	copy fasta	STOX1	chr10	68822531	68898060
STOX1_chr10_68822531_68898060	0/0	t0008	395	1	0	0	1	0	0	copy fasta	STOX1	chr10	68822531	68898060
STOX2_chr4_183900307_184028526	0/1	t0001	7726	78	0	19	44	6	8	copy fasta	STOX2	chr4	183900307	184028526
STOX2_chr4_183900307_184028526	0/0	t0002	7730	46	1	6	25	1	13	copy fasta	STOX2	chr4	183900307	184028526
STOX2_chr4_183900307_184028526	0/0	t0003	7730	26	3	7	10	3	3	copy fasta	STOX2	chr4	183900307	184028526
STOX2_chr4_183900307_184028526	0/0	t0004	7729	9	9	0	0	0	0	copy fasta	STOX2	chr4	183900307	184028526
STOX2_chr4_183900307_184028526	0/0	t0005	7730	7	2	2	0	0	3	copy fasta	STOX2	chr4	183900307	184028526
STOX2_chr4_183900307_184028526	0/0	t0006	7725	6	0	0	6	0	0	copy fasta	STOX2	chr4	183900307	184028526
STOX2_chr4_183900307_184028526	1/0	t0007	7727	6	3	2	0	0	0	copy fasta	STOX2	chr4	183900307	184028526
STOX2_chr4_183900307_184028526	0/0	t0008	7729	5	5	0	0	0	0	copy fasta	STOX2	chr4	183900307	184028526
STOX2_chr4_183900307_184028526	0/0	t0009	7728	5	4	1	0	0	0	copy fasta	STOX2	chr4	183900307	184028526
STOX2_chr4_183900307_184028526	0/0	t0010	7728	4	2	0	0	1	1	copy fasta	STOX2	chr4	183900307	184028526
STOX2_chr4_183900307_184028526	0/0	t0011	7731	4	2	2	0	0	0	copy fasta	STOX2	chr4	183900307	184028526
STOX2_chr4_183900307_184028526	0/0	t0012	7731	4	0	0	0	0	4	copy fasta	STOX2	chr4	183900307	184028526
STOX2_chr4_183900307_184028526	0/0	t0013	7727	3	0	0	3	0	0	copy fasta	STOX2	chr4	183900307	184028526
STOX2_chr4_183900307_184028526	0/0	t0014	7729	3	3	0	0	0	0	copy fasta	STOX2	chr4	183900307	184028526
STOX2_chr4_183900307_184028526	0/0	t0015	7726	3	0	0	3	0	0	copy fasta	STOX2	chr4	183900307	184028526
STOX2_chr4_183900307_184028526	0/0	t0016	7730	2	2	0	0	0	0	copy fasta	STOX2	chr4	183900307	184028526
STOX2_chr4_183900307_184028526	0/0	t0017	7732	2	2	0	0	0	0	copy fasta	STOX2	chr4	183900307	184028526
STOX2_chr4_183900307_184028526	0/0	t0018	7728	2	0	0	0	0	2	copy fasta	STOX2	chr4	183900307	184028526
STOX2_chr4_183900307_184028526	0/0	t0019	7731	2	2	0	0	0	0	copy fasta	STOX2	chr4	183900307	184028526
STOX2_chr4_183900307_184028526	0/0	t0020	7726	2	1	0	0	1	0	copy fasta	STOX2	chr4	183900307	184028526
STOX2_chr4_183900307_184028526	0/0	t0021	7728	2	2	0	0	0	0	copy fasta	STOX2	chr4	183900307	184028526
STOX2_chr4_183900307_184028526	0/0	t0022	7728	2	2	0	0	0	0	copy fasta	STOX2	chr4	183900307	184028526
STOX2_chr4_183900307_184028526	0/0	t0023	7729	2	2	0	0	0	0	copy fasta	STOX2	chr4	183900307	184028526
STOX2_chr4_183900307_184028526	0/0	t0024	7731	2	2	0	0	0	0	copy fasta	STOX2	chr4	183900307	184028526