JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
STOX2_chr4_183900307_184028526	0/0	t0025	7729	2	1	1	0	0	0	copy fasta	STOX2	chr4	183900307	184028526
STOX2_chr4_183900307_184028526	0/0	t0026	7730	2	1	1	0	0	0	copy fasta	STOX2	chr4	183900307	184028526
STOX2_chr4_183900307_184028526	0/0	t0027	7730	2	0	0	2	0	0	copy fasta	STOX2	chr4	183900307	184028526
STOX2_chr4_183900307_184028526	0/0	t0028	7728	2	1	1	0	0	0	copy fasta	STOX2	chr4	183900307	184028526
STOX2_chr4_183900307_184028526	0/0	t0029	7731	2	0	2	0	0	0	copy fasta	STOX2	chr4	183900307	184028526
STOX2_chr4_183900307_184028526	0/0	t0030	7726	2	0	0	2	0	0	copy fasta	STOX2	chr4	183900307	184028526
STOX2_chr4_183900307_184028526	0/0	t0031	7726	1	0	1	0	0	0	copy fasta	STOX2	chr4	183900307	184028526
STOX2_chr4_183900307_184028526	0/0	t0032	7728	1	0	1	0	0	0	copy fasta	STOX2	chr4	183900307	184028526
STOX2_chr4_183900307_184028526	0/0	t0033	7731	1	0	0	0	0	1	copy fasta	STOX2	chr4	183900307	184028526
STOX2_chr4_183900307_184028526	0/0	t0034	7726	1	0	0	1	0	0	copy fasta	STOX2	chr4	183900307	184028526
STOX2_chr4_183900307_184028526	0/0	t0035	7730	1	1	0	0	0	0	copy fasta	STOX2	chr4	183900307	184028526
STOX2_chr4_183900307_184028526	0/0	t0036	7728	1	1	0	0	0	0	copy fasta	STOX2	chr4	183900307	184028526
STOX2_chr4_183900307_184028526	0/0	t0037	7731	1	1	0	0	0	0	copy fasta	STOX2	chr4	183900307	184028526
STOX2_chr4_183900307_184028526	0/0	t0038	7731	1	1	0	0	0	0	copy fasta	STOX2	chr4	183900307	184028526
STOX2_chr4_183900307_184028526	0/0	t0039	7731	1	1	0	0	0	0	copy fasta	STOX2	chr4	183900307	184028526
STOX2_chr4_183900307_184028526	0/0	t0040	7731	1	1	0	0	0	0	copy fasta	STOX2	chr4	183900307	184028526
STOX2_chr4_183900307_184028526	0/0	t0041	7730	1	0	1	0	0	0	copy fasta	STOX2	chr4	183900307	184028526
STOX2_chr4_183900307_184028526	0/0	t0042	7729	1	1	0	0	0	0	copy fasta	STOX2	chr4	183900307	184028526
STOX2_chr4_183900307_184028526	0/0	t0043	7726	1	0	0	1	0	0	copy fasta	STOX2	chr4	183900307	184028526
STOX2_chr4_183900307_184028526	0/0	t0044	7730	1	0	0	1	0	0	copy fasta	STOX2	chr4	183900307	184028526
STOX2_chr4_183900307_184028526	0/0	t0045	7726	1	0	0	1	0	0	copy fasta	STOX2	chr4	183900307	184028526
STOX2_chr4_183900307_184028526	0/0	t0046	7733	1	1	0	0	0	0	copy fasta	STOX2	chr4	183900307	184028526
STOX2_chr4_183900307_184028526	0/0	t0047	7730	1	0	1	0	0	0	copy fasta	STOX2	chr4	183900307	184028526
STOX2_chr4_183900307_184028526	0/0	t0048	7730	1	0	1	0	0	0	copy fasta	STOX2	chr4	183900307	184028526
STOX2_chr4_183900307_184028526	0/0	t0049	7726	1	0	0	1	0	0	copy fasta	STOX2	chr4	183900307	184028526
STOX2_chr4_183900307_184028526	0/0	t0050	7730	1	1	0	0	0	0	copy fasta	STOX2	chr4	183900307	184028526
STOX2_chr4_183900307_184028526	0/0	t0051	7731	1	1	0	0	0	0	copy fasta	STOX2	chr4	183900307	184028526
STOX2_chr4_183900307_184028526	0/0	t0052	7729	1	1	0	0	0	0	copy fasta	STOX2	chr4	183900307	184028526
STOX2_chr4_183900307_184028526	0/0	t0053	7731	1	1	0	0	0	0	copy fasta	STOX2	chr4	183900307	184028526
STOX2_chr4_183900307_184028526	0/0	t0054	7729	1	1	0	0	0	0	copy fasta	STOX2	chr4	183900307	184028526
STOX2_chr4_183900307_184028526	0/0	t0055	7726	1	0	0	1	0	0	copy fasta	STOX2	chr4	183900307	184028526
STOX2_chr4_183900307_184028526	0/0	t0056	7726	1	0	0	1	0	0	copy fasta	STOX2	chr4	183900307	184028526
STOX2_chr4_183900307_184028526	0/0	t0057	7725	1	0	0	1	0	0	copy fasta	STOX2	chr4	183900307	184028526
STOX2_chr4_183900307_184028526	0/0	t0058	7725	1	0	0	0	0	1	copy fasta	STOX2	chr4	183900307	184028526
STOX2_chr4_183900307_184028526	0/0	t0059	7726	1	0	0	1	0	0	copy fasta	STOX2	chr4	183900307	184028526
STOX2_chr4_183900307_184028526	0/0	t0060	7728	1	1	0	0	0	0	copy fasta	STOX2	chr4	183900307	184028526
STOX2_chr4_183900307_184028526	0/0	t0061	7731	1	1	0	0	0	0	copy fasta	STOX2	chr4	183900307	184028526
STOX2_chr4_183900307_184028526	0/0	t0062	7728	1	1	0	0	0	0	copy fasta	STOX2	chr4	183900307	184028526
STOX2_chr4_183900307_184028526	0/0	t0063	7728	1	1	0	0	0	0	copy fasta	STOX2	chr4	183900307	184028526
STOX2_chr4_183900307_184028526	0/0	t0064	7729	1	1	0	0	0	0	copy fasta	STOX2	chr4	183900307	184028526
STOX2_chr4_183900307_184028526	0/0	t0065	7729	1	1	0	0	0	0	copy fasta	STOX2	chr4	183900307	184028526
STOX2_chr4_183900307_184028526	0/0	t0066	7731	1	0	0	0	1	0	copy fasta	STOX2	chr4	183900307	184028526
STOX2_chr4_183900307_184028526	0/0	t0067	7729	1	1	0	0	0	0	copy fasta	STOX2	chr4	183900307	184028526
STOX2_chr4_183900307_184028526	0/0	t0068	7730	1	0	1	0	0	0	copy fasta	STOX2	chr4	183900307	184028526
STOX2_chr4_183900307_184028526	0/0	t0069	7731	1	1	0	0	0	0	copy fasta	STOX2	chr4	183900307	184028526
STOX2_chr4_183900307_184028526	0/0	t0070	7731	1	1	0	0	0	0	copy fasta	STOX2	chr4	183900307	184028526
STOX2_chr4_183900307_184028526	0/0	t0071	7730	1	1	0	0	0	0	copy fasta	STOX2	chr4	183900307	184028526
STOX2_chr4_183900307_184028526	0/0	t0072	7730	1	1	0	0	0	0	copy fasta	STOX2	chr4	183900307	184028526
STOX2_chr4_183900307_184028526	0/0	t0073	7730	1	1	0	0	0	0	copy fasta	STOX2	chr4	183900307	184028526
STOX2_chr4_183900307_184028526	0/0	t0074	7726	1	0	0	1	0	0	copy fasta	STOX2	chr4	183900307	184028526