JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
STOX2_chr4_183900307_184028526	0/0	t0075	7729	1	1	0	0	0	0	copy fasta	STOX2	chr4	183900307	184028526
STOX2_chr4_183900307_184028526	0/0	t0076	7729	1	1	0	0	0	0	copy fasta	STOX2	chr4	183900307	184028526
STOX2_chr4_183900307_184028526	0/0	t0077	7729	1	1	0	0	0	0	copy fasta	STOX2	chr4	183900307	184028526
STOX2_chr4_183900307_184028526	0/0	t0078	7729	1	1	0	0	0	0	copy fasta	STOX2	chr4	183900307	184028526
STOX2_chr4_183900307_184028526	0/0	t0079	7729	1	1	0	0	0	0	copy fasta	STOX2	chr4	183900307	184028526
STOX2_chr4_183900307_184028526	0/0	t0080	7731	1	0	1	0	0	0	copy fasta	STOX2	chr4	183900307	184028526
STOX2_chr4_183900307_184028526	0/0	t0081	7731	1	0	1	0	0	0	copy fasta	STOX2	chr4	183900307	184028526
STOX2_chr4_183900307_184028526	0/0	t0082	7731	1	1	0	0	0	0	copy fasta	STOX2	chr4	183900307	184028526
STOX2_chr4_183900307_184028526	0/0	t0083	7730	1	0	0	1	0	0	copy fasta	STOX2	chr4	183900307	184028526
STOX2_chr4_183900307_184028526	0/0	t0084	7730	1	0	1	0	0	0	copy fasta	STOX2	chr4	183900307	184028526
STOX2_chr4_183900307_184028526	0/0	t0085	7730	1	0	0	1	0	0	copy fasta	STOX2	chr4	183900307	184028526
STOX2_chr4_183900307_184028526	0/0	t0086	7730	1	0	1	0	0	0	copy fasta	STOX2	chr4	183900307	184028526
STOX2_chr4_183900307_184028526	0/0	t0087	7730	1	0	0	1	0	0	copy fasta	STOX2	chr4	183900307	184028526
STOX2_chr4_183900307_184028526	0/0	t0088	7730	1	0	0	0	0	1	copy fasta	STOX2	chr4	183900307	184028526
STOX2_chr4_183900307_184028526	0/0	t0089	7730	1	1	0	0	0	0	copy fasta	STOX2	chr4	183900307	184028526
STOX2_chr4_183900307_184028526	0/0	t0090	7730	1	1	0	0	0	0	copy fasta	STOX2	chr4	183900307	184028526
STOX2_chr4_183900307_184028526	0/0	t0091	7730	1	1	0	0	0	0	copy fasta	STOX2	chr4	183900307	184028526
STOX2_chr4_183900307_184028526	0/0	t0092	7730	1	0	0	0	0	1	copy fasta	STOX2	chr4	183900307	184028526
STOX2_chr4_183900307_184028526	0/0	t0093	7730	1	0	1	0	0	0	copy fasta	STOX2	chr4	183900307	184028526
STOX2_chr4_183900307_184028526	0/0	t0094	7730	1	0	0	0	0	1	copy fasta	STOX2	chr4	183900307	184028526
STOX2_chr4_183900307_184028526	0/0	t0095	7730	1	0	0	0	1	0	copy fasta	STOX2	chr4	183900307	184028526
STOX2_chr4_183900307_184028526	0/0	t0096	7731	1	0	0	0	0	1	copy fasta	STOX2	chr4	183900307	184028526
STOX2_chr4_183900307_184028526	0/0	t0097	7728	1	1	0	0	0	0	copy fasta	STOX2	chr4	183900307	184028526
STOX2_chr4_183900307_184028526	0/0	t0098	7729	1	0	1	0	0	0	copy fasta	STOX2	chr4	183900307	184028526
STOX2_chr4_183900307_184028526	0/0	t0099	7728	1	1	0	0	0	0	copy fasta	STOX2	chr4	183900307	184028526
STOX2_chr4_183900307_184028526	0/0	t0100	7727	1	1	0	0	0	0	copy fasta	STOX2	chr4	183900307	184028526
STOX2_chr4_183900307_184028526	0/0	t0101	7728	1	1	0	0	0	0	copy fasta	STOX2	chr4	183900307	184028526
STOX2_chr4_183900307_184028526	0/0	t0102	7730	1	0	1	0	0	0	copy fasta	STOX2	chr4	183900307	184028526
STOX2_chr4_183900307_184028526	0/0	t0103	7726	1	0	0	1	0	0	copy fasta	STOX2	chr4	183900307	184028526
STOX2_chr4_183900307_184028526	0/0	t0104	7726	1	0	0	1	0	0	copy fasta	STOX2	chr4	183900307	184028526
STOX2_chr4_183900307_184028526	0/0	t0105	7730	1	1	0	0	0	0	copy fasta	STOX2	chr4	183900307	184028526
STOX2_chr4_183900307_184028526	0/0	t0106	7726	1	0	1	0	0	0	copy fasta	STOX2	chr4	183900307	184028526
STOX2_chr4_183900307_184028526	0/0	t0107	7725	1	1	0	0	0	0	copy fasta	STOX2	chr4	183900307	184028526
STOX2_chr4_183900307_184028526	0/0	t0108	7726	1	0	0	1	0	0	copy fasta	STOX2	chr4	183900307	184028526
STOX2_chr4_183900307_184028526	0/0	t0109	7727	1	0	0	1	0	0	copy fasta	STOX2	chr4	183900307	184028526
STPG1_chr1_24351999_24418782	1/0	t0001	1722	91	16	14	42	6	12	copy fasta	STPG1	chr1	24351999	24418782
STPG1_chr1_24351999_24418782	0/1	t0002	1723	73	8	5	42	5	12	copy fasta	STPG1	chr1	24351999	24418782
STPG1_chr1_24351999_24418782	0/0	t0003	1722	49	0	15	25	2	7	copy fasta	STPG1	chr1	24351999	24418782
STPG1_chr1_24351999_24418782	0/0	t0004	1723	20	0	0	18	0	2	copy fasta	STPG1	chr1	24351999	24418782
STPG1_chr1_24351999_24418782	0/0	t0005	1721	20	16	4	0	0	0	copy fasta	STPG1	chr1	24351999	24418782
STPG1_chr1_24351999_24418782	0/0	t0006	1721	18	9	4	0	2	3	copy fasta	STPG1	chr1	24351999	24418782
STPG1_chr1_24351999_24418782	0/0	t0007	1720	14	2	7	0	1	4	copy fasta	STPG1	chr1	24351999	24418782
STPG1_chr1_24351999_24418782	0/0	t0008	1721	12	12	0	0	0	0	copy fasta	STPG1	chr1	24351999	24418782
STPG1_chr1_24351999_24418782	0/0	t0009	1722	10	1	7	2	0	0	copy fasta	STPG1	chr1	24351999	24418782
STPG1_chr1_24351999_24418782	0/0	t0010	1722	6	6	0	0	0	0	copy fasta	STPG1	chr1	24351999	24418782
STPG1_chr1_24351999_24418782	0/0	t0011	1722	3	3	0	0	0	0	copy fasta	STPG1	chr1	24351999	24418782
STPG1_chr1_24351999_24418782	0/0	t0012	1722	3	0	0	3	0	0	copy fasta	STPG1	chr1	24351999	24418782
STPG1_chr1_24351999_24418782	0/0	t0013	1722	3	3	0	0	0	0	copy fasta	STPG1	chr1	24351999	24418782
STPG1_chr1_24351999_24418782	0/0	t0014	1722	2	1	1	0	0	0	copy fasta	STPG1	chr1	24351999	24418782
STPG1_chr1_24351999_24418782	0/0	t0015	1720	2	1	1	0	0	0	copy fasta	STPG1	chr1	24351999	24418782