JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
STPG1_chr1_24351999_24418782	0/0	t0016	1722	2	0	0	2	0	0	copy fasta	STPG1	chr1	24351999	24418782
STPG1_chr1_24351999_24418782	0/0	t0017	1721	2	1	1	0	0	0	copy fasta	STPG1	chr1	24351999	24418782
STPG1_chr1_24351999_24418782	0/0	t0018	1723	2	1	1	0	0	0	copy fasta	STPG1	chr1	24351999	24418782
STPG1_chr1_24351999_24418782	0/0	t0019	1720	2	2	0	0	0	0	copy fasta	STPG1	chr1	24351999	24418782
STPG1_chr1_24351999_24418782	0/0	t0020	1722	1	0	0	0	0	1	copy fasta	STPG1	chr1	24351999	24418782
STPG1_chr1_24351999_24418782	0/0	t0021	1721	1	0	1	0	0	0	copy fasta	STPG1	chr1	24351999	24418782
STPG1_chr1_24351999_24418782	0/0	t0022	1722	1	0	0	1	0	0	copy fasta	STPG1	chr1	24351999	24418782
STPG1_chr1_24351999_24418782	0/0	t0023	1723	1	0	0	1	0	0	copy fasta	STPG1	chr1	24351999	24418782
STPG1_chr1_24351999_24418782	0/0	t0024	1722	1	1	0	0	0	0	copy fasta	STPG1	chr1	24351999	24418782
STPG1_chr1_24351999_24418782	0/0	t0025	1721	1	0	1	0	0	0	copy fasta	STPG1	chr1	24351999	24418782
STPG1_chr1_24351999_24418782	0/0	t0026	1721	1	1	0	0	0	0	copy fasta	STPG1	chr1	24351999	24418782
STPG1_chr1_24351999_24418782	0/0	t0027	1723	1	1	0	0	0	0	copy fasta	STPG1	chr1	24351999	24418782
STPG1_chr1_24351999_24418782	0/0	t0028	1721	1	0	0	1	0	0	copy fasta	STPG1	chr1	24351999	24418782
STPG1_chr1_24351999_24418782	0/0	t0029	1723	1	0	0	1	0	0	copy fasta	STPG1	chr1	24351999	24418782
STPG1_chr1_24351999_24418782	0/0	t0030	1723	1	0	0	0	0	1	copy fasta	STPG1	chr1	24351999	24418782
STPG1_chr1_24351999_24418782	0/0	t0031	1722	1	0	0	1	0	0	copy fasta	STPG1	chr1	24351999	24418782
STPG1_chr1_24351999_24418782	0/0	t0032	1722	1	0	0	1	0	0	copy fasta	STPG1	chr1	24351999	24418782
STPG1_chr1_24351999_24418782	0/0	t0033	1721	1	1	0	0	0	0	copy fasta	STPG1	chr1	24351999	24418782
STPG1_chr1_24351999_24418782	0/0	t0034	1721	1	1	0	0	0	0	copy fasta	STPG1	chr1	24351999	24418782
STPG1_chr1_24351999_24418782	0/0	t0035	1721	1	1	0	0	0	0	copy fasta	STPG1	chr1	24351999	24418782
STPG1_chr1_24351999_24418782	0/0	t0036	1722	1	1	0	0	0	0	copy fasta	STPG1	chr1	24351999	24418782
STPG1_chr1_24351999_24418782	0/0	t0037	1720	1	1	0	0	0	0	copy fasta	STPG1	chr1	24351999	24418782
STPG1_chr1_24351999_24418782	0/0	t0038	1723	1	0	0	1	0	0	copy fasta	STPG1	chr1	24351999	24418782
STPG1_chr1_24351999_24418782	0/0	t0039	1723	1	0	0	1	0	0	copy fasta	STPG1	chr1	24351999	24418782
STPG1_chr1_24351999_24418782	0/0	t0040	1721	1	0	1	0	0	0	copy fasta	STPG1	chr1	24351999	24418782
STPG1_chr1_24351999_24418782	0/0	t0041	1722	1	1	0	0	0	0	copy fasta	STPG1	chr1	24351999	24418782
STPG1_chr1_24351999_24418782	0/0	t0042	1722	1	0	1	0	0	0	copy fasta	STPG1	chr1	24351999	24418782
STPG1_chr1_24351999_24418782	0/0	t0043	1722	1	1	0	0	0	0	copy fasta	STPG1	chr1	24351999	24418782
STPG2_chr4_97553872_98148476	1/0	t0001	513	177	48	41	68	6	13	copy fasta	STPG2	chr4	97553872	98148476
STPG2_chr4_97553872_98148476	0/1	t0002	513	88	29	11	34	2	11	copy fasta	STPG2	chr4	97553872	98148476
STPG2_chr4_97553872_98148476	0/0	t0003	513	1	1	0	0	0	0	copy fasta	STPG2	chr4	97553872	98148476
STPG3_chr9_137246286_137258483	1/1	t0001	239	391	96	75	161	15	42	copy fasta	STPG3	chr9	137246286	137258483
STPG3_chr9_137246286_137258483	0/0	t0002	210	8	0	0	8	0	0	copy fasta	STPG3	chr9	137246286	137258483
STPG3_chr9_137246286_137258483	0/0	t0003	239	4	0	1	0	1	2	copy fasta	STPG3	chr9	137246286	137258483
STPG3_chr9_137246286_137258483	0/0	t0004	239	1	0	0	1	0	0	copy fasta	STPG3	chr9	137246286	137258483
STPG4_chr2_47081991_47160308	1/1	t0001	75	349	87	62	144	14	40	copy fasta	STPG4	chr2	47081991	47160308
STPG4_chr2_47081991_47160308	0/0	t0002	75	3	3	0	0	0	0	copy fasta	STPG4	chr2	47081991	47160308
STRA6_chr15_74174466_74207787	0/1	t0001	705	165	18	33	89	9	15	copy fasta	STRA6	chr15	74174466	74207787
STRA6_chr15_74174466_74207787	1/0	t0002	705	149	47	16	72	4	9	copy fasta	STRA6	chr15	74174466	74207787
STRA6_chr15_74174466_74207787	0/0	t0003	705	17	7	5	0	3	2	copy fasta	STRA6	chr15	74174466	74207787
STRA6_chr15_74174466_74207787	0/0	t0004	705	12	11	1	0	0	0	copy fasta	STRA6	chr15	74174466	74207787
STRA6_chr15_74174466_74207787	0/0	t0005	705	7	6	1	0	0	0	copy fasta	STRA6	chr15	74174466	74207787
STRA6_chr15_74174466_74207787	0/0	t0006	705	2	0	0	1	0	1	copy fasta	STRA6	chr15	74174466	74207787
STRA6_chr15_74174466_74207787	0/0	t0007	705	2	2	0	0	0	0	copy fasta	STRA6	chr15	74174466	74207787
STRA6_chr15_74174466_74207787	0/0	t0008	705	2	0	2	0	0	0	copy fasta	STRA6	chr15	74174466	74207787
STRA6_chr15_74174466_74207787	0/0	t0009	705	1	1	0	0	0	0	copy fasta	STRA6	chr15	74174466	74207787
STRA6_chr15_74174466_74207787	0/0	t0010	705	1	1	0	0	0	0	copy fasta	STRA6	chr15	74174466	74207787
STRA6_chr15_74174466_74207787	0/0	t0011	705	1	1	0	0	0	0	copy fasta	STRA6	chr15	74174466	74207787
STRA6_chr15_74174466_74207787	0/0	t0012	705	1	0	0	0	0	1	copy fasta	STRA6	chr15	74174466	74207787
STRA8_chr7_135228838_135263663	1/0	t0001	244	286	44	57	148	10	26	copy fasta	STRA8	chr7	135228838	135263663