JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
STRA8_chr7_135228838_135263663	0/0	t0002	244	39	4	3	32	0	0	copy fasta	STRA8	chr7	135228838	135263663
STRA8_chr7_135228838_135263663	0/0	t0003	244	35	11	8	4	1	11	copy fasta	STRA8	chr7	135228838	135263663
STRA8_chr7_135228838_135263663	0/1	t0004	244	31	12	8	1	3	6	copy fasta	STRA8	chr7	135228838	135263663
STRA8_chr7_135228838_135263663	0/0	t0005	244	15	14	1	0	0	0	copy fasta	STRA8	chr7	135228838	135263663
STRA8_chr7_135228838_135263663	0/0	t0006	243	4	4	0	0	0	0	copy fasta	STRA8	chr7	135228838	135263663
STRA8_chr7_135228838_135263663	0/0	t0007	243	2	2	0	0	0	0	copy fasta	STRA8	chr7	135228838	135263663
STRA8_chr7_135228838_135263663	0/0	t0008	244	2	1	1	0	0	0	copy fasta	STRA8	chr7	135228838	135263663
STRA8_chr7_135228838_135263663	0/0	t0009	244	1	0	0	1	0	0	copy fasta	STRA8	chr7	135228838	135263663
STRA8_chr7_135228838_135263663	0/0	t0010	244	1	0	0	0	0	1	copy fasta	STRA8	chr7	135228838	135263663
STRADA_chr17_63697832_63746799	0/0	t0001	871	173	57	26	69	6	15	copy fasta	STRADA	chr17	63697832	63746799
STRADA_chr17_63697832_63746799	1/0	t0002	871	96	4	18	58	4	11	copy fasta	STRADA	chr17	63697832	63746799
STRADA_chr17_63697832_63746799	0/1	t0003	871	50	21	11	9	4	4	copy fasta	STRADA	chr17	63697832	63746799
STRADA_chr17_63697832_63746799	0/0	t0004	871	1	0	1	0	0	0	copy fasta	STRADA	chr17	63697832	63746799
STRADA_chr17_63697832_63746799	0/0	t0005	871	1	1	0	0	0	0	copy fasta	STRADA	chr17	63697832	63746799
STRADA_chr17_63697832_63746799	0/0	t0006	871	1	1	0	0	0	0	copy fasta	STRADA	chr17	63697832	63746799
STRADA_chr17_63697832_63746799	0/0	t0007	871	1	1	0	0	0	0	copy fasta	STRADA	chr17	63697832	63746799
STRADA_chr17_63697832_63746799	0/0	t0008	871	1	1	0	0	0	0	copy fasta	STRADA	chr17	63697832	63746799
STRADB_chr2_201446740_201485846	0/1	t0001	966	335	65	61	164	14	30	copy fasta	STRADB	chr2	201446740	201485846
STRADB_chr2_201446740_201485846	0/0	t0002	966	21	0	0	20	0	1	copy fasta	STRADB	chr2	201446740	201485846
STRADB_chr2_201446740_201485846	1/0	t0003	966	15	13	1	0	0	0	copy fasta	STRADB	chr2	201446740	201485846
STRADB_chr2_201446740_201485846	0/0	t0004	961	6	4	2	0	0	0	copy fasta	STRADB	chr2	201446740	201485846
STRADB_chr2_201446740_201485846	0/0	t0005	966	2	0	0	0	0	2	copy fasta	STRADB	chr2	201446740	201485846
STRADB_chr2_201446740_201485846	0/0	t0006	966	1	0	0	1	0	0	copy fasta	STRADB	chr2	201446740	201485846
STRADB_chr2_201446740_201485846	0/0	t0007	968	1	1	0	0	0	0	copy fasta	STRADB	chr2	201446740	201485846
STRADB_chr2_201446740_201485846	0/0	t0008	968	1	1	0	0	0	0	copy fasta	STRADB	chr2	201446740	201485846
STRADB_chr2_201446740_201485846	0/0	t0009	968	1	1	0	0	0	0	copy fasta	STRADB	chr2	201446740	201485846
STRADB_chr2_201446740_201485846	0/0	t0010	966	1	1	0	0	0	0	copy fasta	STRADB	chr2	201446740	201485846
STRADB_chr2_201446740_201485846	0/0	t0011	966	1	0	0	0	0	1	copy fasta	STRADB	chr2	201446740	201485846
STRADB_chr2_201446740_201485846	0/0	t0012	966	1	0	0	1	0	0	copy fasta	STRADB	chr2	201446740	201485846
STRAP_chr12_15877387_15908478	0/1	t0001	823	306	54	55	161	8	27	copy fasta	STRAP	chr12	15877387	15908478
STRAP_chr12_15877387_15908478	0/0	t0002	824	47	36	5	6	0	0	copy fasta	STRAP	chr12	15877387	15908478
STRAP_chr12_15877387_15908478	0/0	t0003	823	1	0	0	1	0	0	copy fasta	STRAP	chr12	15877387	15908478
STRAP_chr12_15877387_15908478	1/0	t0004	822	1	0	0	0	0	0	copy fasta	STRAP	chr12	15877387	15908478
STRAP_chr12_15877387_15908478	0/0	t0005	823	1	0	0	0	0	1	copy fasta	STRAP	chr12	15877387	15908478
STRBP_chr9_123116617_123273586	0/0	t0001	4429	56	2	12	39	1	2	copy fasta	STRBP	chr9	123116617	123273586
STRBP_chr9_123116617_123273586	0/1	t0002	4426	49	1	18	22	1	6	copy fasta	STRBP	chr9	123116617	123273586
STRBP_chr9_123116617_123273586	0/0	t0003	4429	19	15	4	0	0	0	copy fasta	STRBP	chr9	123116617	123273586
STRBP_chr9_123116617_123273586	0/0	t0004	4425	15	6	3	5	1	0	copy fasta	STRBP	chr9	123116617	123273586
STRBP_chr9_123116617_123273586	0/0	t0005	4432	11	0	1	9	0	1	copy fasta	STRBP	chr9	123116617	123273586
STRBP_chr9_123116617_123273586	0/0	t0006	4434	9	6	2	0	0	1	copy fasta	STRBP	chr9	123116617	123273586
STRBP_chr9_123116617_123273586	1/0	t0007	4433	7	6	0	0	0	0	copy fasta	STRBP	chr9	123116617	123273586
STRBP_chr9_123116617_123273586	0/0	t0008	4427	6	0	2	4	0	0	copy fasta	STRBP	chr9	123116617	123273586
STRBP_chr9_123116617_123273586	0/0	t0009	4432	5	4	1	0	0	0	copy fasta	STRBP	chr9	123116617	123273586
STRBP_chr9_123116617_123273586	0/0	t0010	4433	4	4	0	0	0	0	copy fasta	STRBP	chr9	123116617	123273586
STRBP_chr9_123116617_123273586	0/0	t0011	4431	4	0	0	3	1	0	copy fasta	STRBP	chr9	123116617	123273586
STRBP_chr9_123116617_123273586	0/0	t0012	4429	3	3	0	0	0	0	copy fasta	STRBP	chr9	123116617	123273586
STRBP_chr9_123116617_123273586	0/0	t0013	4431	3	3	0	0	0	0	copy fasta	STRBP	chr9	123116617	123273586
STRBP_chr9_123116617_123273586	0/0	t0014	4433	2	2	0	0	0	0	copy fasta	STRBP	chr9	123116617	123273586
STRBP_chr9_123116617_123273586	0/0	t0015	4422	2	0	1	1	0	0	copy fasta	STRBP	chr9	123116617	123273586
STRBP_chr9_123116617_123273586	0/0	t0016	4424	2	2	0	0	0	0	copy fasta	STRBP	chr9	123116617	123273586