JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
STRBP_chr9_123116617_123273586	0/0	t0017	4427	2	0	0	2	0	0	copy fasta	STRBP	chr9	123116617	123273586
STRBP_chr9_123116617_123273586	0/0	t0018	4435	2	2	0	0	0	0	copy fasta	STRBP	chr9	123116617	123273586
STRBP_chr9_123116617_123273586	0/0	t0019	4433	2	2	0	0	0	0	copy fasta	STRBP	chr9	123116617	123273586
STRBP_chr9_123116617_123273586	0/0	t0020	4430	2	1	1	0	0	0	copy fasta	STRBP	chr9	123116617	123273586
STRBP_chr9_123116617_123273586	0/0	t0021	4428	2	0	0	2	0	0	copy fasta	STRBP	chr9	123116617	123273586
STRBP_chr9_123116617_123273586	0/0	t0022	4431	2	0	0	2	0	0	copy fasta	STRBP	chr9	123116617	123273586
STRBP_chr9_123116617_123273586	0/0	t0023	4430	2	0	0	2	0	0	copy fasta	STRBP	chr9	123116617	123273586
STRBP_chr9_123116617_123273586	0/0	t0024	4426	2	0	2	0	0	0	copy fasta	STRBP	chr9	123116617	123273586
STRBP_chr9_123116617_123273586	0/0	t0025	4427	1	0	0	0	0	1	copy fasta	STRBP	chr9	123116617	123273586
STRBP_chr9_123116617_123273586	0/0	t0026	4432	1	0	0	0	0	1	copy fasta	STRBP	chr9	123116617	123273586
STRBP_chr9_123116617_123273586	0/0	t0027	4431	1	0	0	1	0	0	copy fasta	STRBP	chr9	123116617	123273586
STRBP_chr9_123116617_123273586	0/0	t0028	4428	1	0	0	1	0	0	copy fasta	STRBP	chr9	123116617	123273586
STRBP_chr9_123116617_123273586	0/0	t0029	4424	1	0	0	1	0	0	copy fasta	STRBP	chr9	123116617	123273586
STRBP_chr9_123116617_123273586	0/0	t0030	4428	1	1	0	0	0	0	copy fasta	STRBP	chr9	123116617	123273586
STRBP_chr9_123116617_123273586	0/0	t0031	4433	1	1	0	0	0	0	copy fasta	STRBP	chr9	123116617	123273586
STRBP_chr9_123116617_123273586	0/0	t0032	4427	1	1	0	0	0	0	copy fasta	STRBP	chr9	123116617	123273586
STRBP_chr9_123116617_123273586	0/0	t0033	4428	1	1	0	0	0	0	copy fasta	STRBP	chr9	123116617	123273586
STRBP_chr9_123116617_123273586	0/0	t0034	4429	1	1	0	0	0	0	copy fasta	STRBP	chr9	123116617	123273586
STRBP_chr9_123116617_123273586	0/0	t0035	4429	1	0	0	1	0	0	copy fasta	STRBP	chr9	123116617	123273586
STRBP_chr9_123116617_123273586	0/0	t0036	4426	1	0	0	1	0	0	copy fasta	STRBP	chr9	123116617	123273586
STRBP_chr9_123116617_123273586	0/0	t0037	4421	1	0	0	1	0	0	copy fasta	STRBP	chr9	123116617	123273586
STRBP_chr9_123116617_123273586	0/0	t0038	4425	1	0	1	0	0	0	copy fasta	STRBP	chr9	123116617	123273586
STRBP_chr9_123116617_123273586	0/0	t0039	4430	1	1	0	0	0	0	copy fasta	STRBP	chr9	123116617	123273586
STRBP_chr9_123116617_123273586	0/0	t0040	4427	1	1	0	0	0	0	copy fasta	STRBP	chr9	123116617	123273586
STRBP_chr9_123116617_123273586	0/0	t0041	4432	1	1	0	0	0	0	copy fasta	STRBP	chr9	123116617	123273586
STRBP_chr9_123116617_123273586	0/0	t0042	4432	1	1	0	0	0	0	copy fasta	STRBP	chr9	123116617	123273586
STRBP_chr9_123116617_123273586	0/0	t0043	4435	1	1	0	0	0	0	copy fasta	STRBP	chr9	123116617	123273586
STRBP_chr9_123116617_123273586	0/0	t0044	4429	1	1	0	0	0	0	copy fasta	STRBP	chr9	123116617	123273586
STRBP_chr9_123116617_123273586	0/0	t0045	4432	1	0	0	1	0	0	copy fasta	STRBP	chr9	123116617	123273586
STRBP_chr9_123116617_123273586	0/0	t0046	4428	1	0	0	1	0	0	copy fasta	STRBP	chr9	123116617	123273586
STRBP_chr9_123116617_123273586	0/0	t0047	4430	1	0	0	1	0	0	copy fasta	STRBP	chr9	123116617	123273586
STRC_chr15_43594563_43623800	1/1	t0001	188	359	86	68	147	16	40	copy fasta	STRC	chr15	43594563	43623800
STRC_chr15_43594563_43623800	0/0	t0002	188	15	0	0	15	0	0	copy fasta	STRC	chr15	43594563	43623800
STRIP1_chr1_110029624_110059641	1/1	t0001	744	381	72	71	180	16	40	copy fasta	STRIP1	chr1	110029624	110059641
STRIP1_chr1_110029624_110059641	0/0	t0002	744	11	11	0	0	0	0	copy fasta	STRIP1	chr1	110029624	110059641
STRIP1_chr1_110029624_110059641	0/0	t0003	744	5	3	0	0	0	2	copy fasta	STRIP1	chr1	110029624	110059641
STRIP1_chr1_110029624_110059641	0/0	t0004	744	4	4	0	0	0	0	copy fasta	STRIP1	chr1	110029624	110059641
STRIP1_chr1_110029624_110059641	0/0	t0005	744	2	2	0	0	0	0	copy fasta	STRIP1	chr1	110029624	110059641
STRIP1_chr1_110029624_110059641	0/0	t0006	744	1	1	0	0	0	0	copy fasta	STRIP1	chr1	110029624	110059641
STRIP1_chr1_110029624_110059641	0/0	t0007	744	1	1	0	0	0	0	copy fasta	STRIP1	chr1	110029624	110059641
STRIP1_chr1_110029624_110059641	0/0	t0008	744	1	0	1	0	0	0	copy fasta	STRIP1	chr1	110029624	110059641
STRIP2_chr7_129429432_129493399	0/1	t0001	2606	92	25	17	39	3	7	copy fasta	STRIP2	chr7	129429432	129493399
STRIP2_chr7_129429432_129493399	0/0	t0002	2603	81	6	13	49	3	10	copy fasta	STRIP2	chr7	129429432	129493399
STRIP2_chr7_129429432_129493399	0/0	t0003	2607	31	9	6	11	1	4	copy fasta	STRIP2	chr7	129429432	129493399
STRIP2_chr7_129429432_129493399	0/0	t0004	2604	26	0	4	15	0	7	copy fasta	STRIP2	chr7	129429432	129493399
STRIP2_chr7_129429432_129493399	1/0	t0005	2612	20	12	2	4	1	0	copy fasta	STRIP2	chr7	129429432	129493399
STRIP2_chr7_129429432_129493399	0/0	t0006	2600	19	0	13	2	2	2	copy fasta	STRIP2	chr7	129429432	129493399
STRIP2_chr7_129429432_129493399	0/0	t0007	2611	13	5	0	6	0	2	copy fasta	STRIP2	chr7	129429432	129493399
STRIP2_chr7_129429432_129493399	0/0	t0008	2613	12	7	2	0	1	2	copy fasta	STRIP2	chr7	129429432	129493399
STRIP2_chr7_129429432_129493399	0/0	t0009	2605	7	7	0	0	0	0	copy fasta	STRIP2	chr7	129429432	129493399