JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
STRIP2_chr7_129429432_129493399	0/0	t0010	2601	6	1	3	0	0	2	copy fasta	STRIP2	chr7	129429432	129493399
STRIP2_chr7_129429432_129493399	0/0	t0011	2593	5	5	0	0	0	0	copy fasta	STRIP2	chr7	129429432	129493399
STRIP2_chr7_129429432_129493399	0/0	t0012	2606	5	4	1	0	0	0	copy fasta	STRIP2	chr7	129429432	129493399
STRIP2_chr7_129429432_129493399	0/0	t0013	2605	3	1	0	2	0	0	copy fasta	STRIP2	chr7	129429432	129493399
STRIP2_chr7_129429432_129493399	0/0	t0014	2605	2	0	1	1	0	0	copy fasta	STRIP2	chr7	129429432	129493399
STRIP2_chr7_129429432_129493399	0/0	t0015	2606	2	2	0	0	0	0	copy fasta	STRIP2	chr7	129429432	129493399
STRIP2_chr7_129429432_129493399	0/0	t0016	2612	2	2	0	0	0	0	copy fasta	STRIP2	chr7	129429432	129493399
STRIP2_chr7_129429432_129493399	0/0	t0017	2606	2	0	0	2	0	0	copy fasta	STRIP2	chr7	129429432	129493399
STRIP2_chr7_129429432_129493399	0/0	t0018	2602	1	1	0	0	0	0	copy fasta	STRIP2	chr7	129429432	129493399
STRIP2_chr7_129429432_129493399	0/0	t0019	2594	1	1	0	0	0	0	copy fasta	STRIP2	chr7	129429432	129493399
STRIP2_chr7_129429432_129493399	0/0	t0020	2602	1	0	1	0	0	0	copy fasta	STRIP2	chr7	129429432	129493399
STRIP2_chr7_129429432_129493399	0/0	t0021	2603	1	0	1	0	0	0	copy fasta	STRIP2	chr7	129429432	129493399
STRIP2_chr7_129429432_129493399	0/0	t0022	2603	1	0	0	1	0	0	copy fasta	STRIP2	chr7	129429432	129493399
STRIP2_chr7_129429432_129493399	0/0	t0023	2603	1	1	0	0	0	0	copy fasta	STRIP2	chr7	129429432	129493399
STRIP2_chr7_129429432_129493399	0/0	t0024	2605	1	1	0	0	0	0	copy fasta	STRIP2	chr7	129429432	129493399
STRIP2_chr7_129429432_129493399	0/0	t0025	2611	1	1	0	0	0	0	copy fasta	STRIP2	chr7	129429432	129493399
STRIP2_chr7_129429432_129493399	0/0	t0026	2611	1	0	0	0	0	1	copy fasta	STRIP2	chr7	129429432	129493399
STRIP2_chr7_129429432_129493399	0/0	t0027	2613	1	1	0	0	0	0	copy fasta	STRIP2	chr7	129429432	129493399
STRIP2_chr7_129429432_129493399	0/0	t0028	2612	1	0	1	0	0	0	copy fasta	STRIP2	chr7	129429432	129493399
STRIP2_chr7_129429432_129493399	0/0	t0029	2612	1	0	0	0	0	1	copy fasta	STRIP2	chr7	129429432	129493399
STRIP2_chr7_129429432_129493399	0/0	t0030	2606	1	0	0	0	1	0	copy fasta	STRIP2	chr7	129429432	129493399
STRIP2_chr7_129429432_129493399	0/0	t0031	2606	1	0	1	0	0	0	copy fasta	STRIP2	chr7	129429432	129493399
STRIP2_chr7_129429432_129493399	0/0	t0032	2606	1	0	0	1	0	0	copy fasta	STRIP2	chr7	129429432	129493399
STRIP2_chr7_129429432_129493399	0/0	t0033	2607	1	0	0	1	0	0	copy fasta	STRIP2	chr7	129429432	129493399
STRIP2_chr7_129429432_129493399	0/0	t0034	2606	1	1	0	0	0	0	copy fasta	STRIP2	chr7	129429432	129493399
STRIP2_chr7_129429432_129493399	0/0	t0035	2607	1	1	0	0	0	0	copy fasta	STRIP2	chr7	129429432	129493399
STRIT1_chr3_155285227_155298683	1/1	t0001	676	133	20	31	70	4	6	copy fasta	STRIT1	chr3	155285227	155298683
STRIT1_chr3_155285227_155298683	0/0	t0002	677	111	6	16	68	7	14	copy fasta	STRIT1	chr3	155285227	155298683
STRIT1_chr3_155285227_155298683	0/0	t0003	680	39	0	7	31	0	1	copy fasta	STRIT1	chr3	155285227	155298683
STRIT1_chr3_155285227_155298683	0/0	t0004	675	33	27	3	3	0	0	copy fasta	STRIT1	chr3	155285227	155298683
STRIT1_chr3_155285227_155298683	0/0	t0005	677	23	2	6	12	0	3	copy fasta	STRIT1	chr3	155285227	155298683
STRIT1_chr3_155285227_155298683	0/0	t0006	678	22	7	2	11	1	1	copy fasta	STRIT1	chr3	155285227	155298683
STRIT1_chr3_155285227_155298683	0/0	t0007	670	20	9	2	4	1	4	copy fasta	STRIT1	chr3	155285227	155298683
STRIT1_chr3_155285227_155298683	0/0	t0008	679	14	4	2	8	0	0	copy fasta	STRIT1	chr3	155285227	155298683
STRIT1_chr3_155285227_155298683	0/0	t0009	674	13	10	3	0	0	0	copy fasta	STRIT1	chr3	155285227	155298683
STRIT1_chr3_155285227_155298683	0/0	t0010	678	9	0	0	6	0	3	copy fasta	STRIT1	chr3	155285227	155298683
STRIT1_chr3_155285227_155298683	0/0	t0011	681	6	0	2	4	0	0	copy fasta	STRIT1	chr3	155285227	155298683
STRIT1_chr3_155285227_155298683	0/0	t0012	672	5	3	2	0	0	0	copy fasta	STRIT1	chr3	155285227	155298683
STRIT1_chr3_155285227_155298683	0/0	t0013	676	4	1	2	0	0	1	copy fasta	STRIT1	chr3	155285227	155298683
STRIT1_chr3_155285227_155298683	0/0	t0014	676	4	0	0	3	1	0	copy fasta	STRIT1	chr3	155285227	155298683
STRIT1_chr3_155285227_155298683	0/0	t0015	676	1	1	0	0	0	0	copy fasta	STRIT1	chr3	155285227	155298683
STRIT1_chr3_155285227_155298683	0/0	t0016	672	1	1	0	0	0	0	copy fasta	STRIT1	chr3	155285227	155298683
STRIT1_chr3_155285227_155298683	0/0	t0017	679	1	0	0	0	0	1	copy fasta	STRIT1	chr3	155285227	155298683
STRIT1_chr3_155285227_155298683	0/0	t0018	676	1	0	0	1	0	0	copy fasta	STRIT1	chr3	155285227	155298683
STRIT1_chr3_155285227_155298683	0/0	t0019	670	1	1	0	0	0	0	copy fasta	STRIT1	chr3	155285227	155298683
STRIT1_chr3_155285227_155298683	0/0	t0020	677	1	0	0	0	0	1	copy fasta	STRIT1	chr3	155285227	155298683
STRIT1_chr3_155285227_155298683	0/0	t0021	678	1	0	0	1	0	0	copy fasta	STRIT1	chr3	155285227	155298683
STRIT1_chr3_155285227_155298683	0/0	t0022	677	1	0	0	0	0	1	copy fasta	STRIT1	chr3	155285227	155298683
STRN3_chr14_30888804_31031379	0/0	t0001	1804	90	20	10	47	2	11	copy fasta	STRN3	chr14	30888804	31031379
STRN3_chr14_30888804_31031379	0/0	t0002	1801	74	5	5	56	1	7	copy fasta	STRN3	chr14	30888804	31031379