JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
BMP7_chr20_57163753_57271641	0/0	t0016	2726	2	0	1	0	0	1	copy fasta	BMP7	chr20	57163753	57271641
BMP7_chr20_57163753_57271641	0/1	t0017	2725	1	0	0	0	0	0	copy fasta	BMP7	chr20	57163753	57271641
BMP7_chr20_57163753_57271641	0/0	t0018	2725	1	1	0	0	0	0	copy fasta	BMP7	chr20	57163753	57271641
BMP7_chr20_57163753_57271641	0/0	t0019	2726	1	0	0	1	0	0	copy fasta	BMP7	chr20	57163753	57271641
BMP7_chr20_57163753_57271641	0/0	t0020	2726	1	0	0	0	0	1	copy fasta	BMP7	chr20	57163753	57271641
BMP7_chr20_57163753_57271641	0/0	t0021	2725	1	0	1	0	0	0	copy fasta	BMP7	chr20	57163753	57271641
BMP7_chr20_57163753_57271641	0/0	t0022	2726	1	0	0	1	0	0	copy fasta	BMP7	chr20	57163753	57271641
BMP7_chr20_57163753_57271641	0/0	t0023	2726	1	1	0	0	0	0	copy fasta	BMP7	chr20	57163753	57271641
BMP7_chr20_57163753_57271641	0/0	t0024	2716	1	1	0	0	0	0	copy fasta	BMP7	chr20	57163753	57271641
BMP7_chr20_57163753_57271641	0/0	t0025	2725	1	1	0	0	0	0	copy fasta	BMP7	chr20	57163753	57271641
BMP7_chr20_57163753_57271641	0/0	t0026	2726	1	1	0	0	0	0	copy fasta	BMP7	chr20	57163753	57271641
BMP7_chr20_57163753_57271641	0/0	t0027	2726	1	1	0	0	0	0	copy fasta	BMP7	chr20	57163753	57271641
BMP7_chr20_57163753_57271641	0/0	t0028	2725	1	0	0	0	1	0	copy fasta	BMP7	chr20	57163753	57271641
BMP8A_chr1_39486636_39534869	0/0	t0001	4432	134	7	29	70	5	23	copy fasta	BMP8A	chr1	39486636	39534869
BMP8A_chr1_39486636_39534869	0/0	t0002	4429	42	1	10	28	1	2	copy fasta	BMP8A	chr1	39486636	39534869
BMP8A_chr1_39486636_39534869	0/0	t0003	4428	37	0	5	32	0	0	copy fasta	BMP8A	chr1	39486636	39534869
BMP8A_chr1_39486636_39534869	0/0	t0004	4427	18	16	1	0	0	1	copy fasta	BMP8A	chr1	39486636	39534869
BMP8A_chr1_39486636_39534869	0/0	t0005	4428	10	2	0	0	3	5	copy fasta	BMP8A	chr1	39486636	39534869
BMP8A_chr1_39486636_39534869	1/0	t0006	4428	8	7	0	0	0	0	copy fasta	BMP8A	chr1	39486636	39534869
BMP8A_chr1_39486636_39534869	0/0	t0007	4431	8	0	4	0	0	4	copy fasta	BMP8A	chr1	39486636	39534869
BMP8A_chr1_39486636_39534869	0/0	t0008	4429	8	0	1	0	4	3	copy fasta	BMP8A	chr1	39486636	39534869
BMP8A_chr1_39486636_39534869	0/1	t0009	4428	8	1	4	0	2	0	copy fasta	BMP8A	chr1	39486636	39534869
BMP8A_chr1_39486636_39534869	0/0	t0010	4428	7	6	1	0	0	0	copy fasta	BMP8A	chr1	39486636	39534869
BMP8A_chr1_39486636_39534869	0/0	t0011	4427	5	2	2	0	0	1	copy fasta	BMP8A	chr1	39486636	39534869
BMP8A_chr1_39486636_39534869	0/0	t0012	4428	4	4	0	0	0	0	copy fasta	BMP8A	chr1	39486636	39534869
BMP8A_chr1_39486636_39534869	0/0	t0013	4427	4	0	0	4	0	0	copy fasta	BMP8A	chr1	39486636	39534869
BMP8A_chr1_39486636_39534869	0/0	t0014	4429	4	4	0	0	0	0	copy fasta	BMP8A	chr1	39486636	39534869
BMP8A_chr1_39486636_39534869	0/0	t0015	4428	3	3	0	0	0	0	copy fasta	BMP8A	chr1	39486636	39534869
BMP8A_chr1_39486636_39534869	0/0	t0016	4429	3	3	0	0	0	0	copy fasta	BMP8A	chr1	39486636	39534869
BMP8A_chr1_39486636_39534869	0/0	t0017	4432	3	0	0	3	0	0	copy fasta	BMP8A	chr1	39486636	39534869
BMP8A_chr1_39486636_39534869	0/0	t0018	4432	3	3	0	0	0	0	copy fasta	BMP8A	chr1	39486636	39534869
BMP8A_chr1_39486636_39534869	0/0	t0019	4428	3	3	0	0	0	0	copy fasta	BMP8A	chr1	39486636	39534869
BMP8A_chr1_39486636_39534869	0/0	t0020	4428	3	2	1	0	0	0	copy fasta	BMP8A	chr1	39486636	39534869
BMP8A_chr1_39486636_39534869	0/0	t0021	4428	3	3	0	0	0	0	copy fasta	BMP8A	chr1	39486636	39534869
BMP8A_chr1_39486636_39534869	0/0	t0022	4432	2	0	0	2	0	0	copy fasta	BMP8A	chr1	39486636	39534869
BMP8A_chr1_39486636_39534869	0/0	t0023	4433	2	0	0	2	0	0	copy fasta	BMP8A	chr1	39486636	39534869
BMP8A_chr1_39486636_39534869	0/0	t0024	4430	2	0	1	1	0	0	copy fasta	BMP8A	chr1	39486636	39534869
BMP8A_chr1_39486636_39534869	0/0	t0025	4428	2	2	0	0	0	0	copy fasta	BMP8A	chr1	39486636	39534869
BMP8A_chr1_39486636_39534869	0/0	t0026	4427	1	1	0	0	0	0	copy fasta	BMP8A	chr1	39486636	39534869
BMP8A_chr1_39486636_39534869	0/0	t0027	4428	1	0	0	1	0	0	copy fasta	BMP8A	chr1	39486636	39534869
BMP8A_chr1_39486636_39534869	0/0	t0028	4428	1	1	0	0	0	0	copy fasta	BMP8A	chr1	39486636	39534869
BMP8A_chr1_39486636_39534869	0/0	t0029	4429	1	1	0	0	0	0	copy fasta	BMP8A	chr1	39486636	39534869
BMP8A_chr1_39486636_39534869	0/0	t0030	4428	1	0	1	0	0	0	copy fasta	BMP8A	chr1	39486636	39534869
BMP8A_chr1_39486636_39534869	0/0	t0031	4428	1	0	1	0	0	0	copy fasta	BMP8A	chr1	39486636	39534869
BMP8A_chr1_39486636_39534869	0/0	t0032	4428	1	1	0	0	0	0	copy fasta	BMP8A	chr1	39486636	39534869
BMP8A_chr1_39486636_39534869	0/0	t0033	4430	1	1	0	0	0	0	copy fasta	BMP8A	chr1	39486636	39534869
BMP8A_chr1_39486636_39534869	0/0	t0034	4429	1	1	0	0	0	0	copy fasta	BMP8A	chr1	39486636	39534869
BMP8A_chr1_39486636_39534869	0/0	t0035	4432	1	0	0	1	0	0	copy fasta	BMP8A	chr1	39486636	39534869
BMP8A_chr1_39486636_39534869	0/0	t0036	4432	1	1	0	0	0	0	copy fasta	BMP8A	chr1	39486636	39534869
BMP8A_chr1_39486636_39534869	0/0	t0037	4432	1	0	0	0	1	0	copy fasta	BMP8A	chr1	39486636	39534869