JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
STRN3_chr14_30888804_31031379	0/0	t0003	1803	45	2	8	30	0	5	copy fasta	STRN3	chr14	30888804	31031379
STRN3_chr14_30888804_31031379	0/1	t0004	1805	23	4	7	10	1	0	copy fasta	STRN3	chr14	30888804	31031379
STRN3_chr14_30888804_31031379	1/0	t0005	1802	22	4	2	10	2	3	copy fasta	STRN3	chr14	30888804	31031379
STRN3_chr14_30888804_31031379	0/0	t0006	1802	18	3	7	0	1	7	copy fasta	STRN3	chr14	30888804	31031379
STRN3_chr14_30888804_31031379	0/0	t0007	1803	15	7	6	2	0	0	copy fasta	STRN3	chr14	30888804	31031379
STRN3_chr14_30888804_31031379	0/0	t0008	1800	8	6	0	2	0	0	copy fasta	STRN3	chr14	30888804	31031379
STRN3_chr14_30888804_31031379	0/0	t0009	1799	8	7	0	0	0	1	copy fasta	STRN3	chr14	30888804	31031379
STRN3_chr14_30888804_31031379	0/0	t0010	1798	5	0	0	5	0	0	copy fasta	STRN3	chr14	30888804	31031379
STRN3_chr14_30888804_31031379	0/0	t0011	1804	5	2	1	2	0	0	copy fasta	STRN3	chr14	30888804	31031379
STRN3_chr14_30888804_31031379	0/0	t0012	1804	4	4	0	0	0	0	copy fasta	STRN3	chr14	30888804	31031379
STRN3_chr14_30888804_31031379	0/0	t0013	1805	4	1	1	0	0	2	copy fasta	STRN3	chr14	30888804	31031379
STRN3_chr14_30888804_31031379	0/0	t0014	1803	3	3	0	0	0	0	copy fasta	STRN3	chr14	30888804	31031379
STRN3_chr14_30888804_31031379	0/0	t0015	1798	3	0	0	3	0	0	copy fasta	STRN3	chr14	30888804	31031379
STRN3_chr14_30888804_31031379	0/0	t0016	1801	2	1	1	0	0	0	copy fasta	STRN3	chr14	30888804	31031379
STRN3_chr14_30888804_31031379	0/0	t0017	1799	2	0	0	0	0	2	copy fasta	STRN3	chr14	30888804	31031379
STRN3_chr14_30888804_31031379	0/0	t0018	1803	2	0	2	0	0	0	copy fasta	STRN3	chr14	30888804	31031379
STRN3_chr14_30888804_31031379	0/0	t0019	1818	2	1	0	1	0	0	copy fasta	STRN3	chr14	30888804	31031379
STRN3_chr14_30888804_31031379	0/0	t0020	1813	2	0	2	0	0	0	copy fasta	STRN3	chr14	30888804	31031379
STRN3_chr14_30888804_31031379	0/0	t0021	1816	1	0	1	0	0	0	copy fasta	STRN3	chr14	30888804	31031379
STRN3_chr14_30888804_31031379	0/0	t0022	1802	1	1	0	0	0	0	copy fasta	STRN3	chr14	30888804	31031379
STRN3_chr14_30888804_31031379	0/0	t0023	1804	1	1	0	0	0	0	copy fasta	STRN3	chr14	30888804	31031379
STRN3_chr14_30888804_31031379	0/0	t0024	1803	1	1	0	0	0	0	copy fasta	STRN3	chr14	30888804	31031379
STRN3_chr14_30888804_31031379	0/0	t0025	1804	1	1	0	0	0	0	copy fasta	STRN3	chr14	30888804	31031379
STRN3_chr14_30888804_31031379	0/0	t0026	1801	1	1	0	0	0	0	copy fasta	STRN3	chr14	30888804	31031379
STRN3_chr14_30888804_31031379	0/0	t0027	1801	1	0	0	0	0	1	copy fasta	STRN3	chr14	30888804	31031379
STRN3_chr14_30888804_31031379	0/0	t0028	1803	1	0	1	0	0	0	copy fasta	STRN3	chr14	30888804	31031379
STRN3_chr14_30888804_31031379	0/0	t0029	1803	1	0	0	1	0	0	copy fasta	STRN3	chr14	30888804	31031379
STRN3_chr14_30888804_31031379	0/0	t0030	1804	1	1	0	0	0	0	copy fasta	STRN3	chr14	30888804	31031379
STRN3_chr14_30888804_31031379	0/0	t0031	1805	1	1	0	0	0	0	copy fasta	STRN3	chr14	30888804	31031379
STRN3_chr14_30888804_31031379	0/0	t0032	1798	1	1	0	0	0	0	copy fasta	STRN3	chr14	30888804	31031379
STRN3_chr14_30888804_31031379	0/0	t0033	1813	1	0	0	0	1	0	copy fasta	STRN3	chr14	30888804	31031379
STRN3_chr14_30888804_31031379	0/0	t0034	1814	1	0	1	0	0	0	copy fasta	STRN3	chr14	30888804	31031379
STRN3_chr14_30888804_31031379	0/0	t0035	1815	1	0	0	0	0	1	copy fasta	STRN3	chr14	30888804	31031379
STRN3_chr14_30888804_31031379	0/0	t0036	1819	1	0	0	1	0	0	copy fasta	STRN3	chr14	30888804	31031379
STRN3_chr14_30888804_31031379	0/0	t0037	1821	1	0	1	0	0	0	copy fasta	STRN3	chr14	30888804	31031379
STRN3_chr14_30888804_31031379	0/0	t0038	1820	1	1	0	0	0	0	copy fasta	STRN3	chr14	30888804	31031379
STRN3_chr14_30888804_31031379	0/0	t0039	1821	1	1	0	0	0	0	copy fasta	STRN3	chr14	30888804	31031379
STRN3_chr14_30888804_31031379	0/0	t0040	1822	1	0	0	1	0	0	copy fasta	STRN3	chr14	30888804	31031379
STRN3_chr14_30888804_31031379	0/0	t0041	1824	1	0	1	0	0	0	copy fasta	STRN3	chr14	30888804	31031379
STRN3_chr14_30888804_31031379	0/0	t0042	1825	1	1	0	0	0	0	copy fasta	STRN3	chr14	30888804	31031379
STRN3_chr14_30888804_31031379	0/0	t0043	1814	1	0	1	0	0	0	copy fasta	STRN3	chr14	30888804	31031379
STRN3_chr14_30888804_31031379	0/0	t0044	1815	1	0	1	0	0	0	copy fasta	STRN3	chr14	30888804	31031379
STRN3_chr14_30888804_31031379	0/0	t0045	1803	1	1	0	0	0	0	copy fasta	STRN3	chr14	30888804	31031379
STRN3_chr14_30888804_31031379	0/0	t0046	1778	1	0	1	0	0	0	copy fasta	STRN3	chr14	30888804	31031379
STRN3_chr14_30888804_31031379	0/0	t0047	1803	1	0	0	1	0	0	copy fasta	STRN3	chr14	30888804	31031379
STRN4_chr19_46714511_46751450	0/1	t0001	915	254	78	52	79	12	32	copy fasta	STRN4	chr19	46714511	46751450
STRN4_chr19_46714511_46751450	1/0	t0002	915	80	8	16	48	1	6	copy fasta	STRN4	chr19	46714511	46751450
STRN4_chr19_46714511_46751450	0/0	t0003	915	41	5	7	24	1	4	copy fasta	STRN4	chr19	46714511	46751450
STRN4_chr19_46714511_46751450	0/0	t0004	915	17	3	1	11	0	2	copy fasta	STRN4	chr19	46714511	46751450
STRN4_chr19_46714511_46751450	0/0	t0005	915	2	0	2	0	0	0	copy fasta	STRN4	chr19	46714511	46751450