JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
STRN4_chr19_46714511_46751450	0/0	t0006	915	2	0	0	2	0	0	copy fasta	STRN4	chr19	46714511	46751450
STRN4_chr19_46714511_46751450	0/0	t0007	915	1	0	0	1	0	0	copy fasta	STRN4	chr19	46714511	46751450
STRN4_chr19_46714511_46751450	0/0	t0008	915	1	0	0	1	0	0	copy fasta	STRN4	chr19	46714511	46751450
STRN4_chr19_46714511_46751450	0/0	t0009	915	1	0	1	0	0	0	copy fasta	STRN4	chr19	46714511	46751450
STRN4_chr19_46714511_46751450	0/0	t0010	915	1	0	0	1	0	0	copy fasta	STRN4	chr19	46714511	46751450
STRN4_chr19_46714511_46751450	0/0	t0011	915	1	0	0	1	0	0	copy fasta	STRN4	chr19	46714511	46751450
STRN4_chr19_46714511_46751450	0/0	t0012	915	1	0	1	0	0	0	copy fasta	STRN4	chr19	46714511	46751450
STRN_chr2_36832698_36971536	0/1	t0001	11809	30	2	5	16	1	5	copy fasta	STRN	chr2	36832698	36971536
STRN_chr2_36832698_36971536	0/0	t0002	11811	12	4	4	3	1	0	copy fasta	STRN	chr2	36832698	36971536
STRN_chr2_36832698_36971536	0/0	t0003	11805	5	0	1	3	0	1	copy fasta	STRN	chr2	36832698	36971536
STRN_chr2_36832698_36971536	0/0	t0004	11813	4	0	1	2	1	0	copy fasta	STRN	chr2	36832698	36971536
STRN_chr2_36832698_36971536	0/0	t0005	11811	4	0	0	4	0	0	copy fasta	STRN	chr2	36832698	36971536
STRN_chr2_36832698_36971536	1/0	t0006	11832	3	2	0	0	0	0	copy fasta	STRN	chr2	36832698	36971536
STRN_chr2_36832698_36971536	0/0	t0007	11815	3	3	0	0	0	0	copy fasta	STRN	chr2	36832698	36971536
STRN_chr2_36832698_36971536	0/0	t0008	11807	3	0	2	1	0	0	copy fasta	STRN	chr2	36832698	36971536
STRN_chr2_36832698_36971536	0/0	t0009	11809	3	0	0	0	2	1	copy fasta	STRN	chr2	36832698	36971536
STRN_chr2_36832698_36971536	0/0	t0010	11820	3	3	0	0	0	0	copy fasta	STRN	chr2	36832698	36971536
STRN_chr2_36832698_36971536	0/0	t0011	11798	3	0	0	3	0	0	copy fasta	STRN	chr2	36832698	36971536
STRN_chr2_36832698_36971536	0/0	t0012	11806	3	0	1	0	2	0	copy fasta	STRN	chr2	36832698	36971536
STRN_chr2_36832698_36971536	0/0	t0013	11799	3	0	1	2	0	0	copy fasta	STRN	chr2	36832698	36971536
STRN_chr2_36832698_36971536	0/0	t0014	11807	3	0	0	2	0	1	copy fasta	STRN	chr2	36832698	36971536
STRN_chr2_36832698_36971536	0/0	t0015	11807	3	0	0	2	0	1	copy fasta	STRN	chr2	36832698	36971536
STRN_chr2_36832698_36971536	0/0	t0016	11833	2	0	0	2	0	0	copy fasta	STRN	chr2	36832698	36971536
STRN_chr2_36832698_36971536	0/0	t0017	11786	2	2	0	0	0	0	copy fasta	STRN	chr2	36832698	36971536
STRN_chr2_36832698_36971536	0/0	t0018	11809	2	0	0	0	0	2	copy fasta	STRN	chr2	36832698	36971536
STRN_chr2_36832698_36971536	0/0	t0019	11817	2	2	0	0	0	0	copy fasta	STRN	chr2	36832698	36971536
STRN_chr2_36832698_36971536	0/0	t0020	11825	2	2	0	0	0	0	copy fasta	STRN	chr2	36832698	36971536
STRN_chr2_36832698_36971536	0/0	t0021	11805	2	0	0	2	0	0	copy fasta	STRN	chr2	36832698	36971536
STRN_chr2_36832698_36971536	0/0	t0022	11809	2	0	0	2	0	0	copy fasta	STRN	chr2	36832698	36971536
STRN_chr2_36832698_36971536	0/0	t0023	11809	2	0	0	2	0	0	copy fasta	STRN	chr2	36832698	36971536
STRN_chr2_36832698_36971536	0/0	t0024	11809	2	0	1	0	0	1	copy fasta	STRN	chr2	36832698	36971536
STRN_chr2_36832698_36971536	0/0	t0025	11809	2	0	0	2	0	0	copy fasta	STRN	chr2	36832698	36971536
STRN_chr2_36832698_36971536	0/0	t0026	11811	2	0	0	2	0	0	copy fasta	STRN	chr2	36832698	36971536
STRN_chr2_36832698_36971536	0/0	t0027	11815	2	0	0	2	0	0	copy fasta	STRN	chr2	36832698	36971536
STRN_chr2_36832698_36971536	0/0	t0028	11815	2	0	0	2	0	0	copy fasta	STRN	chr2	36832698	36971536
STRN_chr2_36832698_36971536	0/0	t0029	11805	2	1	1	0	0	0	copy fasta	STRN	chr2	36832698	36971536
STRN_chr2_36832698_36971536	0/0	t0030	11807	2	1	1	0	0	0	copy fasta	STRN	chr2	36832698	36971536
STRN_chr2_36832698_36971536	0/0	t0031	11799	2	0	1	0	0	1	copy fasta	STRN	chr2	36832698	36971536
STRN_chr2_36832698_36971536	0/0	t0032	11801	2	0	0	0	1	1	copy fasta	STRN	chr2	36832698	36971536
STRN_chr2_36832698_36971536	0/0	t0033	11809	2	2	0	0	0	0	copy fasta	STRN	chr2	36832698	36971536
STRN_chr2_36832698_36971536	0/0	t0034	11804	2	1	1	0	0	0	copy fasta	STRN	chr2	36832698	36971536
STRN_chr2_36832698_36971536	0/0	t0035	11808	2	0	0	0	0	2	copy fasta	STRN	chr2	36832698	36971536
STRN_chr2_36832698_36971536	0/0	t0036	11807	2	0	0	0	0	2	copy fasta	STRN	chr2	36832698	36971536
STRN_chr2_36832698_36971536	0/0	t0037	11811	2	0	0	1	0	1	copy fasta	STRN	chr2	36832698	36971536
STRN_chr2_36832698_36971536	0/0	t0038	11824	2	0	2	0	0	0	copy fasta	STRN	chr2	36832698	36971536
STRN_chr2_36832698_36971536	0/0	t0039	11830	2	2	0	0	0	0	copy fasta	STRN	chr2	36832698	36971536
STRN_chr2_36832698_36971536	0/0	t0040	11783	2	0	0	2	0	0	copy fasta	STRN	chr2	36832698	36971536
STRN_chr2_36832698_36971536	0/0	t0041	11797	2	0	0	2	0	0	copy fasta	STRN	chr2	36832698	36971536
STRN_chr2_36832698_36971536	0/0	t0042	11801	2	0	0	2	0	0	copy fasta	STRN	chr2	36832698	36971536
STRN_chr2_36832698_36971536	0/0	t0043	11803	2	0	0	2	0	0	copy fasta	STRN	chr2	36832698	36971536