JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	SAS	tseq	genename	chr	start	end
STRN_chr2_36832698_36971536	0/0	t0044	11803	2	0	0	2	0	copy fasta	STRN	chr2	36832698	36971536
STRN_chr2_36832698_36971536	0/0	t0045	11812	2	0	0	2	0	copy fasta	STRN	chr2	36832698	36971536
STRN_chr2_36832698_36971536	0/0	t0046	11811	2	0	0	2	0	copy fasta	STRN	chr2	36832698	36971536
STRN_chr2_36832698_36971536	0/0	t0047	11810	2	0	0	2	0	copy fasta	STRN	chr2	36832698	36971536
STRN_chr2_36832698_36971536	0/0	t0048	11813	2	0	0	2	0	copy fasta	STRN	chr2	36832698	36971536
STRN_chr2_36832698_36971536	0/0	t0049	11808	2	1	1	0	0	copy fasta	STRN	chr2	36832698	36971536
STRN_chr2_36832698_36971536	0/0	t0050	11810	2	2	0	0	0	copy fasta	STRN	chr2	36832698	36971536
STRN_chr2_36832698_36971536	0/0	t0051	11786	1	0	0	1	0	copy fasta	STRN	chr2	36832698	36971536
STRN_chr2_36832698_36971536	0/0	t0052	11807	1	1	0	0	0	copy fasta	STRN	chr2	36832698	36971536
STRN_chr2_36832698_36971536	0/0	t0053	11806	1	0	0	0	1	copy fasta	STRN	chr2	36832698	36971536
STRN_chr2_36832698_36971536	0/0	t0054	11800	1	1	0	0	0	copy fasta	STRN	chr2	36832698	36971536
STRN_chr2_36832698_36971536	0/0	t0055	11788	1	1	0	0	0	copy fasta	STRN	chr2	36832698	36971536
STRN_chr2_36832698_36971536	0/0	t0056	11834	1	1	0	0	0	copy fasta	STRN	chr2	36832698	36971536
STRN_chr2_36832698_36971536	0/0	t0057	11834	1	1	0	0	0	copy fasta	STRN	chr2	36832698	36971536
STRN_chr2_36832698_36971536	0/0	t0058	11838	1	1	0	0	0	copy fasta	STRN	chr2	36832698	36971536
STRN_chr2_36832698_36971536	0/0	t0059	11840	1	1	0	0	0	copy fasta	STRN	chr2	36832698	36971536
STRN_chr2_36832698_36971536	0/0	t0060	11842	1	1	0	0	0	copy fasta	STRN	chr2	36832698	36971536
STRN_chr2_36832698_36971536	0/0	t0061	11842	1	1	0	0	0	copy fasta	STRN	chr2	36832698	36971536
STRN_chr2_36832698_36971536	0/0	t0062	11803	1	0	0	1	0	copy fasta	STRN	chr2	36832698	36971536
STRN_chr2_36832698_36971536	0/0	t0063	11810	1	1	0	0	0	copy fasta	STRN	chr2	36832698	36971536
STRN_chr2_36832698_36971536	0/0	t0064	11811	1	1	0	0	0	copy fasta	STRN	chr2	36832698	36971536
STRN_chr2_36832698_36971536	0/0	t0065	11829	1	0	0	0	1	copy fasta	STRN	chr2	36832698	36971536
STRN_chr2_36832698_36971536	0/0	t0066	11833	1	0	0	0	1	copy fasta	STRN	chr2	36832698	36971536
STRN_chr2_36832698_36971536	0/0	t0067	11831	1	1	0	0	0	copy fasta	STRN	chr2	36832698	36971536
STRN_chr2_36832698_36971536	0/0	t0068	11835	1	0	1	0	0	copy fasta	STRN	chr2	36832698	36971536
STRN_chr2_36832698_36971536	0/0	t0069	11833	1	1	0	0	0	copy fasta	STRN	chr2	36832698	36971536
STRN_chr2_36832698_36971536	0/0	t0070	11835	1	0	0	1	0	copy fasta	STRN	chr2	36832698	36971536
STRN_chr2_36832698_36971536	0/0	t0071	11837	1	0	0	1	0	copy fasta	STRN	chr2	36832698	36971536
STRN_chr2_36832698_36971536	0/0	t0072	11839	1	0	0	1	0	copy fasta	STRN	chr2	36832698	36971536
STRN_chr2_36832698_36971536	0/0	t0073	11841	1	0	0	0	1	copy fasta	STRN	chr2	36832698	36971536
STRN_chr2_36832698_36971536	0/0	t0074	11823	1	1	0	0	0	copy fasta	STRN	chr2	36832698	36971536
STRN_chr2_36832698_36971536	0/0	t0075	11823	1	1	0	0	0	copy fasta	STRN	chr2	36832698	36971536
STRN_chr2_36832698_36971536	0/0	t0076	11826	1	1	0	0	0	copy fasta	STRN	chr2	36832698	36971536
STRN_chr2_36832698_36971536	0/0	t0077	11821	1	0	0	0	1	copy fasta	STRN	chr2	36832698	36971536
STRN_chr2_36832698_36971536	0/0	t0078	11801	1	1	0	0	0	copy fasta	STRN	chr2	36832698	36971536
STRN_chr2_36832698_36971536	0/0	t0079	11828	1	1	0	0	0	copy fasta	STRN	chr2	36832698	36971536
STRN_chr2_36832698_36971536	0/0	t0080	11824	1	1	0	0	0	copy fasta	STRN	chr2	36832698	36971536
STRN_chr2_36832698_36971536	0/0	t0081	11824	1	1	0	0	0	copy fasta	STRN	chr2	36832698	36971536
STRN_chr2_36832698_36971536	0/0	t0082	11803	1	1	0	0	0	copy fasta	STRN	chr2	36832698	36971536
STRN_chr2_36832698_36971536	0/0	t0083	11830	1	0	1	0	0	copy fasta	STRN	chr2	36832698	36971536
STRN_chr2_36832698_36971536	0/0	t0084	11809	1	1	0	0	0	copy fasta	STRN	chr2	36832698	36971536
STRN_chr2_36832698_36971536	0/0	t0085	11807	1	1	0	0	0	copy fasta	STRN	chr2	36832698	36971536
STRN_chr2_36832698_36971536	0/0	t0086	11811	1	0	1	0	0	copy fasta	STRN	chr2	36832698	36971536
STRN_chr2_36832698_36971536	0/0	t0087	11807	1	0	0	1	0	copy fasta	STRN	chr2	36832698	36971536
STRN_chr2_36832698_36971536	0/0	t0088	11812	1	0	1	0	0	copy fasta	STRN	chr2	36832698	36971536
STRN_chr2_36832698_36971536	0/0	t0089	11810	1	0	0	1	0	copy fasta	STRN	chr2	36832698	36971536
STRN_chr2_36832698_36971536	0/0	t0090	11810	1	0	0	1	0	copy fasta	STRN	chr2	36832698	36971536
STRN_chr2_36832698_36971536	0/0	t0091	11807	1	0	0	1	0	copy fasta	STRN	chr2	36832698	36971536
STRN_chr2_36832698_36971536	0/0	t0092	11810	1	0	0	1	0	copy fasta	STRN	chr2	36832698	36971536
STRN_chr2_36832698_36971536	0/0	t0093	11810	1	0	0	0	1	copy fasta	STRN	chr2	36832698	36971536