JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
STRN_chr2_36832698_36971536	0/0	t0094	11809	1	0	1	0	0	0	copy fasta	STRN	chr2	36832698	36971536
STRN_chr2_36832698_36971536	0/0	t0095	11809	1	0	0	1	0	0	copy fasta	STRN	chr2	36832698	36971536
STRN_chr2_36832698_36971536	0/0	t0096	11809	1	0	0	0	0	1	copy fasta	STRN	chr2	36832698	36971536
STRN_chr2_36832698_36971536	0/0	t0097	11808	1	0	0	0	0	1	copy fasta	STRN	chr2	36832698	36971536
STRN_chr2_36832698_36971536	0/0	t0098	11808	1	0	0	0	1	0	copy fasta	STRN	chr2	36832698	36971536
STRN_chr2_36832698_36971536	0/0	t0099	11809	1	0	0	1	0	0	copy fasta	STRN	chr2	36832698	36971536
STRN_chr2_36832698_36971536	0/0	t0100	11809	1	0	0	1	0	0	copy fasta	STRN	chr2	36832698	36971536
STRN_chr2_36832698_36971536	0/0	t0101	11811	1	0	1	0	0	0	copy fasta	STRN	chr2	36832698	36971536
STRN_chr2_36832698_36971536	0/0	t0102	11809	1	0	0	1	0	0	copy fasta	STRN	chr2	36832698	36971536
STRN_chr2_36832698_36971536	0/0	t0103	11785	1	0	0	1	0	0	copy fasta	STRN	chr2	36832698	36971536
STRN_chr2_36832698_36971536	0/0	t0104	11785	1	0	0	0	0	1	copy fasta	STRN	chr2	36832698	36971536
STRN_chr2_36832698_36971536	0/0	t0105	11783	1	0	1	0	0	0	copy fasta	STRN	chr2	36832698	36971536
STRN_chr2_36832698_36971536	0/0	t0106	11811	1	0	1	0	0	0	copy fasta	STRN	chr2	36832698	36971536
STRN_chr2_36832698_36971536	0/0	t0107	11811	1	0	0	1	0	0	copy fasta	STRN	chr2	36832698	36971536
STRN_chr2_36832698_36971536	0/0	t0108	11811	1	1	0	0	0	0	copy fasta	STRN	chr2	36832698	36971536
STRN_chr2_36832698_36971536	0/0	t0109	11811	1	0	1	0	0	0	copy fasta	STRN	chr2	36832698	36971536
STRN_chr2_36832698_36971536	0/0	t0110	11817	1	0	0	1	0	0	copy fasta	STRN	chr2	36832698	36971536
STRN_chr2_36832698_36971536	0/0	t0111	11821	1	0	0	1	0	0	copy fasta	STRN	chr2	36832698	36971536
STRN_chr2_36832698_36971536	0/0	t0112	11823	1	0	0	1	0	0	copy fasta	STRN	chr2	36832698	36971536
STRN_chr2_36832698_36971536	0/0	t0113	11803	1	0	0	0	0	1	copy fasta	STRN	chr2	36832698	36971536
STRN_chr2_36832698_36971536	0/0	t0114	11805	1	1	0	0	0	0	copy fasta	STRN	chr2	36832698	36971536
STRN_chr2_36832698_36971536	0/0	t0115	11818	1	1	0	0	0	0	copy fasta	STRN	chr2	36832698	36971536
STRN_chr2_36832698_36971536	0/0	t0116	11777	1	0	1	0	0	0	copy fasta	STRN	chr2	36832698	36971536
STRN_chr2_36832698_36971536	0/0	t0117	11799	1	0	0	1	0	0	copy fasta	STRN	chr2	36832698	36971536
STRN_chr2_36832698_36971536	0/0	t0118	11818	1	1	0	0	0	0	copy fasta	STRN	chr2	36832698	36971536
STRN_chr2_36832698_36971536	0/0	t0119	11801	1	0	0	1	0	0	copy fasta	STRN	chr2	36832698	36971536
STRN_chr2_36832698_36971536	0/0	t0120	11800	1	1	0	0	0	0	copy fasta	STRN	chr2	36832698	36971536
STRN_chr2_36832698_36971536	0/0	t0121	11800	1	0	1	0	0	0	copy fasta	STRN	chr2	36832698	36971536
STRN_chr2_36832698_36971536	0/0	t0122	11798	1	0	1	0	0	0	copy fasta	STRN	chr2	36832698	36971536
STRN_chr2_36832698_36971536	0/0	t0123	11799	1	1	0	0	0	0	copy fasta	STRN	chr2	36832698	36971536
STRN_chr2_36832698_36971536	0/0	t0124	11805	1	0	1	0	0	0	copy fasta	STRN	chr2	36832698	36971536
STRN_chr2_36832698_36971536	0/0	t0125	11802	1	0	0	0	0	1	copy fasta	STRN	chr2	36832698	36971536
STRN_chr2_36832698_36971536	0/0	t0126	11827	1	0	1	0	0	0	copy fasta	STRN	chr2	36832698	36971536
STRN_chr2_36832698_36971536	0/0	t0127	11805	1	0	0	1	0	0	copy fasta	STRN	chr2	36832698	36971536
STRN_chr2_36832698_36971536	0/0	t0128	11804	1	0	0	0	1	0	copy fasta	STRN	chr2	36832698	36971536
STRN_chr2_36832698_36971536	0/0	t0129	11803	1	1	0	0	0	0	copy fasta	STRN	chr2	36832698	36971536
STRN_chr2_36832698_36971536	0/0	t0130	11805	1	1	0	0	0	0	copy fasta	STRN	chr2	36832698	36971536
STRN_chr2_36832698_36971536	0/0	t0131	11808	1	1	0	0	0	0	copy fasta	STRN	chr2	36832698	36971536
STRN_chr2_36832698_36971536	0/0	t0132	11806	1	0	1	0	0	0	copy fasta	STRN	chr2	36832698	36971536
STRN_chr2_36832698_36971536	0/0	t0133	11807	1	0	0	1	0	0	copy fasta	STRN	chr2	36832698	36971536
STRN_chr2_36832698_36971536	0/0	t0134	11803	1	0	1	0	0	0	copy fasta	STRN	chr2	36832698	36971536
STRN_chr2_36832698_36971536	0/0	t0135	11805	1	0	1	0	0	0	copy fasta	STRN	chr2	36832698	36971536
STRN_chr2_36832698_36971536	0/0	t0136	11804	1	0	0	1	0	0	copy fasta	STRN	chr2	36832698	36971536
STRN_chr2_36832698_36971536	0/0	t0137	11805	1	1	0	0	0	0	copy fasta	STRN	chr2	36832698	36971536
STRN_chr2_36832698_36971536	0/0	t0138	11803	1	0	0	0	1	0	copy fasta	STRN	chr2	36832698	36971536
STRN_chr2_36832698_36971536	0/0	t0139	11811	1	1	0	0	0	0	copy fasta	STRN	chr2	36832698	36971536
STRN_chr2_36832698_36971536	0/0	t0140	11810	1	0	0	1	0	0	copy fasta	STRN	chr2	36832698	36971536
STRN_chr2_36832698_36971536	0/0	t0141	11813	1	1	0	0	0	0	copy fasta	STRN	chr2	36832698	36971536
STRN_chr2_36832698_36971536	0/0	t0142	11812	1	0	0	0	0	1	copy fasta	STRN	chr2	36832698	36971536
STRN_chr2_36832698_36971536	0/0	t0143	11814	1	0	1	0	0	0	copy fasta	STRN	chr2	36832698	36971536