JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
STRN_chr2_36832698_36971536	0/0	t0144	11811	1	0	0	0	0	1	copy fasta	STRN	chr2	36832698	36971536
STRN_chr2_36832698_36971536	0/0	t0145	11821	1	0	1	0	0	0	copy fasta	STRN	chr2	36832698	36971536
STRN_chr2_36832698_36971536	0/0	t0146	11825	1	1	0	0	0	0	copy fasta	STRN	chr2	36832698	36971536
STRN_chr2_36832698_36971536	0/0	t0147	11827	1	1	0	0	0	0	copy fasta	STRN	chr2	36832698	36971536
STRN_chr2_36832698_36971536	0/0	t0148	11833	1	1	0	0	0	0	copy fasta	STRN	chr2	36832698	36971536
STRN_chr2_36832698_36971536	0/0	t0149	11817	1	1	0	0	0	0	copy fasta	STRN	chr2	36832698	36971536
STRN_chr2_36832698_36971536	0/0	t0150	11822	1	0	1	0	0	0	copy fasta	STRN	chr2	36832698	36971536
STRN_chr2_36832698_36971536	0/0	t0151	11824	1	1	0	0	0	0	copy fasta	STRN	chr2	36832698	36971536
STRN_chr2_36832698_36971536	0/0	t0152	11800	1	1	0	0	0	0	copy fasta	STRN	chr2	36832698	36971536
STRN_chr2_36832698_36971536	0/0	t0153	11824	1	1	0	0	0	0	copy fasta	STRN	chr2	36832698	36971536
STRN_chr2_36832698_36971536	0/0	t0154	11828	1	0	0	0	0	1	copy fasta	STRN	chr2	36832698	36971536
STRN_chr2_36832698_36971536	0/0	t0155	11830	1	1	0	0	0	0	copy fasta	STRN	chr2	36832698	36971536
STRN_chr2_36832698_36971536	0/0	t0156	11832	1	1	0	0	0	0	copy fasta	STRN	chr2	36832698	36971536
STRN_chr2_36832698_36971536	0/0	t0157	11799	1	0	0	0	0	1	copy fasta	STRN	chr2	36832698	36971536
STRN_chr2_36832698_36971536	0/0	t0158	11786	1	0	0	1	0	0	copy fasta	STRN	chr2	36832698	36971536
STRN_chr2_36832698_36971536	0/0	t0159	11785	1	0	1	0	0	0	copy fasta	STRN	chr2	36832698	36971536
STRN_chr2_36832698_36971536	0/0	t0160	11790	1	0	0	1	0	0	copy fasta	STRN	chr2	36832698	36971536
STRN_chr2_36832698_36971536	0/0	t0161	11789	1	0	0	1	0	0	copy fasta	STRN	chr2	36832698	36971536
STRN_chr2_36832698_36971536	0/0	t0162	11788	1	0	1	0	0	0	copy fasta	STRN	chr2	36832698	36971536
STRN_chr2_36832698_36971536	0/0	t0163	11801	1	0	0	1	0	0	copy fasta	STRN	chr2	36832698	36971536
STRN_chr2_36832698_36971536	0/0	t0164	11797	1	0	0	1	0	0	copy fasta	STRN	chr2	36832698	36971536
STRN_chr2_36832698_36971536	0/0	t0165	11800	1	0	0	1	0	0	copy fasta	STRN	chr2	36832698	36971536
STRN_chr2_36832698_36971536	0/0	t0166	11799	1	0	0	0	0	1	copy fasta	STRN	chr2	36832698	36971536
STRN_chr2_36832698_36971536	0/0	t0167	11801	1	0	0	1	0	0	copy fasta	STRN	chr2	36832698	36971536
STRN_chr2_36832698_36971536	0/0	t0168	11801	1	0	0	1	0	0	copy fasta	STRN	chr2	36832698	36971536
STRN_chr2_36832698_36971536	0/0	t0169	11799	1	0	0	1	0	0	copy fasta	STRN	chr2	36832698	36971536
STRN_chr2_36832698_36971536	0/0	t0170	11806	1	0	0	1	0	0	copy fasta	STRN	chr2	36832698	36971536
STRN_chr2_36832698_36971536	0/0	t0171	11805	1	0	0	1	0	0	copy fasta	STRN	chr2	36832698	36971536
STRN_chr2_36832698_36971536	0/0	t0172	11801	1	0	0	1	0	0	copy fasta	STRN	chr2	36832698	36971536
STRN_chr2_36832698_36971536	0/0	t0173	11793	1	0	0	1	0	0	copy fasta	STRN	chr2	36832698	36971536
STRN_chr2_36832698_36971536	0/0	t0174	11807	1	0	1	0	0	0	copy fasta	STRN	chr2	36832698	36971536
STRN_chr2_36832698_36971536	0/0	t0175	11806	1	0	0	1	0	0	copy fasta	STRN	chr2	36832698	36971536
STRN_chr2_36832698_36971536	0/0	t0176	11808	1	0	0	0	0	1	copy fasta	STRN	chr2	36832698	36971536
STRN_chr2_36832698_36971536	0/0	t0177	11808	1	0	0	1	0	0	copy fasta	STRN	chr2	36832698	36971536
STRN_chr2_36832698_36971536	0/0	t0178	11811	1	0	0	1	0	0	copy fasta	STRN	chr2	36832698	36971536
STRN_chr2_36832698_36971536	0/0	t0179	11810	1	0	0	1	0	0	copy fasta	STRN	chr2	36832698	36971536
STRN_chr2_36832698_36971536	0/0	t0180	11809	1	0	1	0	0	0	copy fasta	STRN	chr2	36832698	36971536
STRN_chr2_36832698_36971536	0/0	t0181	11807	1	0	0	1	0	0	copy fasta	STRN	chr2	36832698	36971536
STRN_chr2_36832698_36971536	0/0	t0182	11811	1	0	0	1	0	0	copy fasta	STRN	chr2	36832698	36971536
STRN_chr2_36832698_36971536	0/0	t0183	11810	1	0	1	0	0	0	copy fasta	STRN	chr2	36832698	36971536
STRN_chr2_36832698_36971536	0/0	t0184	11809	1	0	1	0	0	0	copy fasta	STRN	chr2	36832698	36971536
STRN_chr2_36832698_36971536	0/0	t0185	11814	1	0	0	1	0	0	copy fasta	STRN	chr2	36832698	36971536
STRN_chr2_36832698_36971536	0/0	t0186	11812	1	0	0	0	1	0	copy fasta	STRN	chr2	36832698	36971536
STRN_chr2_36832698_36971536	0/0	t0187	11811	1	0	0	1	0	0	copy fasta	STRN	chr2	36832698	36971536
STRN_chr2_36832698_36971536	0/0	t0188	11813	1	0	0	1	0	0	copy fasta	STRN	chr2	36832698	36971536
STRN_chr2_36832698_36971536	0/0	t0189	11812	1	0	0	0	1	0	copy fasta	STRN	chr2	36832698	36971536
STRN_chr2_36832698_36971536	0/0	t0190	11813	1	0	0	1	0	0	copy fasta	STRN	chr2	36832698	36971536
STRN_chr2_36832698_36971536	0/0	t0191	11820	1	0	0	1	0	0	copy fasta	STRN	chr2	36832698	36971536
STRN_chr2_36832698_36971536	0/0	t0192	11817	1	0	0	1	0	0	copy fasta	STRN	chr2	36832698	36971536
STRN_chr2_36832698_36971536	0/0	t0193	11799	1	0	0	0	1	0	copy fasta	STRN	chr2	36832698	36971536