JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
STRN_chr2_36832698_36971536	0/0	t0194	11813	1	0	0	1	0	0	copy fasta	STRN	chr2	36832698	36971536
STRN_chr2_36832698_36971536	0/0	t0195	11804	1	1	0	0	0	0	copy fasta	STRN	chr2	36832698	36971536
STRN_chr2_36832698_36971536	0/0	t0196	11806	1	0	1	0	0	0	copy fasta	STRN	chr2	36832698	36971536
STRN_chr2_36832698_36971536	0/0	t0197	11812	1	1	0	0	0	0	copy fasta	STRN	chr2	36832698	36971536
STS_chrX_7142712_7359641	0/0	t0001	4886	64	16	10	29	2	7	copy fasta	STS	chrX	7142712	7359641
STS_chrX_7142712_7359641	0/0	t0002	4886	50	13	10	17	3	7	copy fasta	STS	chrX	7142712	7359641
STS_chrX_7142712_7359641	0/0	t0003	4886	44	2	15	23	2	2	copy fasta	STS	chrX	7142712	7359641
STS_chrX_7142712_7359641	0/0	t0004	4887	15	0	0	15	0	0	copy fasta	STS	chrX	7142712	7359641
STS_chrX_7142712_7359641	0/0	t0005	4886	9	9	0	0	0	0	copy fasta	STS	chrX	7142712	7359641
STS_chrX_7142712_7359641	0/1	t0006	4886	5	0	1	0	2	1	copy fasta	STS	chrX	7142712	7359641
STS_chrX_7142712_7359641	1/0	t0007	4886	4	0	0	0	2	1	copy fasta	STS	chrX	7142712	7359641
STS_chrX_7142712_7359641	0/0	t0008	4886	2	0	2	0	0	0	copy fasta	STS	chrX	7142712	7359641
STS_chrX_7142712_7359641	0/0	t0009	4885	2	0	1	1	0	0	copy fasta	STS	chrX	7142712	7359641
STS_chrX_7142712_7359641	0/0	t0010	4886	2	2	0	0	0	0	copy fasta	STS	chrX	7142712	7359641
STS_chrX_7142712_7359641	0/0	t0011	4887	2	1	0	1	0	0	copy fasta	STS	chrX	7142712	7359641
STS_chrX_7142712_7359641	0/0	t0012	4886	2	0	2	0	0	0	copy fasta	STS	chrX	7142712	7359641
STS_chrX_7142712_7359641	0/0	t0013	4885	2	0	1	1	0	0	copy fasta	STS	chrX	7142712	7359641
STS_chrX_7142712_7359641	0/0	t0014	4887	1	0	0	0	0	1	copy fasta	STS	chrX	7142712	7359641
STS_chrX_7142712_7359641	0/0	t0015	4887	1	0	0	1	0	0	copy fasta	STS	chrX	7142712	7359641
STS_chrX_7142712_7359641	0/0	t0016	4886	1	0	1	0	0	0	copy fasta	STS	chrX	7142712	7359641
STS_chrX_7142712_7359641	0/0	t0017	4886	1	0	0	1	0	0	copy fasta	STS	chrX	7142712	7359641
STS_chrX_7142712_7359641	0/0	t0018	4886	1	0	0	0	0	1	copy fasta	STS	chrX	7142712	7359641
STS_chrX_7142712_7359641	0/0	t0019	4886	1	0	0	0	0	1	copy fasta	STS	chrX	7142712	7359641
STS_chrX_7142712_7359641	0/0	t0020	4885	1	1	0	0	0	0	copy fasta	STS	chrX	7142712	7359641
STS_chrX_7142712_7359641	0/0	t0021	4889	1	0	0	1	0	0	copy fasta	STS	chrX	7142712	7359641
STS_chrX_7142712_7359641	0/0	t0022	4886	1	0	1	0	0	0	copy fasta	STS	chrX	7142712	7359641
STS_chrX_7142712_7359641	0/0	t0023	4887	1	0	1	0	0	0	copy fasta	STS	chrX	7142712	7359641
STS_chrX_7142712_7359641	0/0	t0024	4886	1	0	0	1	0	0	copy fasta	STS	chrX	7142712	7359641
STS_chrX_7142712_7359641	0/0	t0025	4885	1	0	0	1	0	0	copy fasta	STS	chrX	7142712	7359641
STS_chrX_7142712_7359641	0/0	t0026	4886	1	1	0	0	0	0	copy fasta	STS	chrX	7142712	7359641
STS_chrX_7142712_7359641	0/0	t0027	4886	1	1	0	0	0	0	copy fasta	STS	chrX	7142712	7359641
STS_chrX_7142712_7359641	0/0	t0028	4886	1	0	1	0	0	0	copy fasta	STS	chrX	7142712	7359641
STS_chrX_7142712_7359641	0/0	t0029	4886	1	0	0	1	0	0	copy fasta	STS	chrX	7142712	7359641
STS_chrX_7142712_7359641	0/0	t0030	4886	1	0	0	1	0	0	copy fasta	STS	chrX	7142712	7359641
STS_chrX_7142712_7359641	0/0	t0031	4886	1	0	0	1	0	0	copy fasta	STS	chrX	7142712	7359641
STS_chrX_7142712_7359641	0/0	t0032	4886	1	1	0	0	0	0	copy fasta	STS	chrX	7142712	7359641
STS_chrX_7142712_7359641	0/0	t0033	4882	1	0	0	0	0	1	copy fasta	STS	chrX	7142712	7359641
STS_chrX_7142712_7359641	0/0	t0034	4882	1	0	0	1	0	0	copy fasta	STS	chrX	7142712	7359641
STS_chrX_7142712_7359641	0/0	t0035	4885	1	1	0	0	0	0	copy fasta	STS	chrX	7142712	7359641
STS_chrX_7142712_7359641	0/0	t0036	4886	1	1	0	0	0	0	copy fasta	STS	chrX	7142712	7359641
STS_chrX_7142712_7359641	0/0	t0037	4886	1	1	0	0	0	0	copy fasta	STS	chrX	7142712	7359641
STS_chrX_7142712_7359641	0/0	t0038	4886	1	1	0	0	0	0	copy fasta	STS	chrX	7142712	7359641
STS_chrX_7142712_7359641	0/0	t0039	4889	1	0	0	1	0	0	copy fasta	STS	chrX	7142712	7359641
STS_chrX_7142712_7359641	0/0	t0040	4886	1	1	0	0	0	0	copy fasta	STS	chrX	7142712	7359641
STS_chrX_7142712_7359641	0/0	t0041	4889	1	0	0	1	0	0	copy fasta	STS	chrX	7142712	7359641
STT3A_chr11_125587852_125628091	0/0	t0001	2383	85	31	17	24	5	8	copy fasta	STT3A	chr11	125587852	125628091
STT3A_chr11_125587852_125628091	0/0	t0002	2385	66	13	12	31	3	7	copy fasta	STT3A	chr11	125587852	125628091
STT3A_chr11_125587852_125628091	0/0	t0003	2384	45	1	11	28	1	4	copy fasta	STT3A	chr11	125587852	125628091
STT3A_chr11_125587852_125628091	1/0	t0004	2384	37	7	6	23	0	0	copy fasta	STT3A	chr11	125587852	125628091
STT3A_chr11_125587852_125628091	0/0	t0005	2383	23	14	3	3	1	2	copy fasta	STT3A	chr11	125587852	125628091