JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
STT3A_chr11_125587852_125628091	0/1	t0006	2383	12	0	1	9	1	0	copy fasta	STT3A	chr11	125587852	125628091
STT3A_chr11_125587852_125628091	0/0	t0007	2385	9	0	0	9	0	0	copy fasta	STT3A	chr11	125587852	125628091
STT3A_chr11_125587852_125628091	0/0	t0008	2384	8	8	0	0	0	0	copy fasta	STT3A	chr11	125587852	125628091
STT3A_chr11_125587852_125628091	0/0	t0009	2385	6	0	2	4	0	0	copy fasta	STT3A	chr11	125587852	125628091
STT3A_chr11_125587852_125628091	0/0	t0010	2384	6	4	1	1	0	0	copy fasta	STT3A	chr11	125587852	125628091
STT3A_chr11_125587852_125628091	0/0	t0011	2385	4	1	1	2	0	0	copy fasta	STT3A	chr11	125587852	125628091
STT3A_chr11_125587852_125628091	0/0	t0012	2382	4	0	0	4	0	0	copy fasta	STT3A	chr11	125587852	125628091
STT3A_chr11_125587852_125628091	0/0	t0013	2383	4	0	0	4	0	0	copy fasta	STT3A	chr11	125587852	125628091
STT3A_chr11_125587852_125628091	0/0	t0014	2386	4	0	0	3	0	1	copy fasta	STT3A	chr11	125587852	125628091
STT3A_chr11_125587852_125628091	0/0	t0015	2382	3	2	1	0	0	0	copy fasta	STT3A	chr11	125587852	125628091
STT3A_chr11_125587852_125628091	0/0	t0016	2383	3	0	2	1	0	0	copy fasta	STT3A	chr11	125587852	125628091
STT3A_chr11_125587852_125628091	0/0	t0017	2386	3	0	0	3	0	0	copy fasta	STT3A	chr11	125587852	125628091
STT3A_chr11_125587852_125628091	0/0	t0018	2383	2	2	0	0	0	0	copy fasta	STT3A	chr11	125587852	125628091
STT3A_chr11_125587852_125628091	0/0	t0019	2384	2	0	0	0	1	1	copy fasta	STT3A	chr11	125587852	125628091
STT3A_chr11_125587852_125628091	0/0	t0020	2384	2	0	0	0	1	1	copy fasta	STT3A	chr11	125587852	125628091
STT3A_chr11_125587852_125628091	0/0	t0021	2381	2	0	0	2	0	0	copy fasta	STT3A	chr11	125587852	125628091
STT3A_chr11_125587852_125628091	0/0	t0022	2382	2	1	0	1	0	0	copy fasta	STT3A	chr11	125587852	125628091
STT3A_chr11_125587852_125628091	0/0	t0023	2385	2	0	2	0	0	0	copy fasta	STT3A	chr11	125587852	125628091
STT3A_chr11_125587852_125628091	0/0	t0024	2385	2	1	1	0	0	0	copy fasta	STT3A	chr11	125587852	125628091
STT3A_chr11_125587852_125628091	0/0	t0025	2385	2	0	0	2	0	0	copy fasta	STT3A	chr11	125587852	125628091
STT3A_chr11_125587852_125628091	0/0	t0026	2383	1	0	0	0	0	1	copy fasta	STT3A	chr11	125587852	125628091
STT3A_chr11_125587852_125628091	0/0	t0027	2383	1	0	0	1	0	0	copy fasta	STT3A	chr11	125587852	125628091
STT3A_chr11_125587852_125628091	0/0	t0028	2383	1	0	0	0	0	1	copy fasta	STT3A	chr11	125587852	125628091
STT3A_chr11_125587852_125628091	0/0	t0029	2383	1	0	1	0	0	0	copy fasta	STT3A	chr11	125587852	125628091
STT3A_chr11_125587852_125628091	0/0	t0030	2383	1	1	0	0	0	0	copy fasta	STT3A	chr11	125587852	125628091
STT3A_chr11_125587852_125628091	0/0	t0031	2384	1	0	0	0	0	1	copy fasta	STT3A	chr11	125587852	125628091
STT3A_chr11_125587852_125628091	0/0	t0032	2385	1	0	1	0	0	0	copy fasta	STT3A	chr11	125587852	125628091
STT3A_chr11_125587852_125628091	0/0	t0033	2382	1	0	1	0	0	0	copy fasta	STT3A	chr11	125587852	125628091
STT3A_chr11_125587852_125628091	0/0	t0034	2383	1	0	0	1	0	0	copy fasta	STT3A	chr11	125587852	125628091
STT3A_chr11_125587852_125628091	0/0	t0035	2384	1	0	1	0	0	0	copy fasta	STT3A	chr11	125587852	125628091
STT3A_chr11_125587852_125628091	0/0	t0036	2385	1	0	0	1	0	0	copy fasta	STT3A	chr11	125587852	125628091
STT3A_chr11_125587852_125628091	0/0	t0037	2385	1	0	0	0	0	1	copy fasta	STT3A	chr11	125587852	125628091
STT3A_chr11_125587852_125628091	0/0	t0038	2386	1	0	0	1	0	0	copy fasta	STT3A	chr11	125587852	125628091
STT3A_chr11_125587852_125628091	0/0	t0039	2383	1	1	0	0	0	0	copy fasta	STT3A	chr11	125587852	125628091
STT3A_chr11_125587852_125628091	0/0	t0040	2386	1	0	0	1	0	0	copy fasta	STT3A	chr11	125587852	125628091
STT3A_chr11_125587852_125628091	0/0	t0041	2384	1	1	0	0	0	0	copy fasta	STT3A	chr11	125587852	125628091
STT3A_chr11_125587852_125628091	0/0	t0042	2386	1	0	0	0	0	1	copy fasta	STT3A	chr11	125587852	125628091
STT3A_chr11_125587852_125628091	0/0	t0043	2383	1	1	0	0	0	0	copy fasta	STT3A	chr11	125587852	125628091
STT3A_chr11_125587852_125628091	0/0	t0044	2384	1	0	0	0	0	1	copy fasta	STT3A	chr11	125587852	125628091
STT3A_chr11_125587852_125628091	0/0	t0045	2385	1	1	0	0	0	0	copy fasta	STT3A	chr11	125587852	125628091
STT3A_chr11_125587852_125628091	0/0	t0046	2382	1	0	0	1	0	0	copy fasta	STT3A	chr11	125587852	125628091
STT3A_chr11_125587852_125628091	0/0	t0047	2383	1	0	0	0	1	0	copy fasta	STT3A	chr11	125587852	125628091
STT3B_chr3_31527925_31642616	0/1	t0001	1627	229	64	42	102	7	13	copy fasta	STT3B	chr3	31527925	31642616
STT3B_chr3_31527925_31642616	0/0	t0002	1627	52	0	0	49	0	3	copy fasta	STT3B	chr3	31527925	31642616
STT3B_chr3_31527925_31642616	1/0	t0003	1627	27	15	3	6	0	2	copy fasta	STT3B	chr3	31527925	31642616
STT3B_chr3_31527925_31642616	0/0	t0004	1627	26	8	6	7	3	2	copy fasta	STT3B	chr3	31527925	31642616
STT3B_chr3_31527925_31642616	0/0	t0005	1627	4	3	1	0	0	0	copy fasta	STT3B	chr3	31527925	31642616
STT3B_chr3_31527925_31642616	0/0	t0006	1627	2	0	0	0	2	0	copy fasta	STT3B	chr3	31527925	31642616
STT3B_chr3_31527925_31642616	0/0	t0007	1627	1	0	0	1	0	0	copy fasta	STT3B	chr3	31527925	31642616
STT3B_chr3_31527925_31642616	0/0	t0008	1627	1	0	0	1	0	0	copy fasta	STT3B	chr3	31527925	31642616