JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
STUB1_chr16_675410_687801	1/1	t0001	429	333	77	58	139	12	45	copy fasta	STUB1	chr16	675410	687801
STUB1_chr16_675410_687801	0/0	t0002	429	11	10	1	0	0	0	copy fasta	STUB1	chr16	675410	687801
STUB1_chr16_675410_687801	0/0	t0003	429	5	5	0	0	0	0	copy fasta	STUB1	chr16	675410	687801
STUB1_chr16_675410_687801	0/0	t0004	429	2	0	0	2	0	0	copy fasta	STUB1	chr16	675410	687801
STUB1_chr16_675410_687801	0/0	t0005	429	1	0	0	1	0	0	copy fasta	STUB1	chr16	675410	687801
STUB1_chr16_675410_687801	0/0	t0006	429	1	0	0	0	0	1	copy fasta	STUB1	chr16	675410	687801
STUB1_chr16_675410_687801	0/0	t0007	429	1	1	0	0	0	0	copy fasta	STUB1	chr16	675410	687801
STUB1_chr16_675410_687801	0/0	t0008	429	1	1	0	0	0	0	copy fasta	STUB1	chr16	675410	687801
STUB1_chr16_675410_687801	0/0	t0009	429	1	0	1	0	0	0	copy fasta	STUB1	chr16	675410	687801
STUM_chr1_226543764_226614230	0/0	t0001	7333	66	2	3	45	1	15	copy fasta	STUM	chr1	226543764	226614230
STUM_chr1_226543764_226614230	0/0	t0002	7335	59	0	9	43	1	6	copy fasta	STUM	chr1	226543764	226614230
STUM_chr1_226543764_226614230	0/0	t0003	7332	52	8	14	24	0	6	copy fasta	STUM	chr1	226543764	226614230
STUM_chr1_226543764_226614230	1/1	t0004	7332	39	1	12	12	4	8	copy fasta	STUM	chr1	226543764	226614230
STUM_chr1_226543764_226614230	0/0	t0005	7335	19	7	2	9	0	1	copy fasta	STUM	chr1	226543764	226614230
STUM_chr1_226543764_226614230	0/0	t0006	7335	14	11	2	0	0	1	copy fasta	STUM	chr1	226543764	226614230
STUM_chr1_226543764_226614230	0/0	t0007	7333	13	12	1	0	0	0	copy fasta	STUM	chr1	226543764	226614230
STUM_chr1_226543764_226614230	0/0	t0008	7332	10	0	0	10	0	0	copy fasta	STUM	chr1	226543764	226614230
STUM_chr1_226543764_226614230	0/0	t0009	7335	10	1	5	2	1	1	copy fasta	STUM	chr1	226543764	226614230
STUM_chr1_226543764_226614230	0/0	t0010	7335	6	6	0	0	0	0	copy fasta	STUM	chr1	226543764	226614230
STUM_chr1_226543764_226614230	0/0	t0011	7335	6	0	0	6	0	0	copy fasta	STUM	chr1	226543764	226614230
STUM_chr1_226543764_226614230	0/0	t0012	7333	5	0	0	5	0	0	copy fasta	STUM	chr1	226543764	226614230
STUM_chr1_226543764_226614230	0/0	t0013	7332	5	5	0	0	0	0	copy fasta	STUM	chr1	226543764	226614230
STUM_chr1_226543764_226614230	0/0	t0014	7333	4	4	0	0	0	0	copy fasta	STUM	chr1	226543764	226614230
STUM_chr1_226543764_226614230	0/0	t0015	7333	4	4	0	0	0	0	copy fasta	STUM	chr1	226543764	226614230
STUM_chr1_226543764_226614230	0/0	t0016	7332	4	0	0	4	0	0	copy fasta	STUM	chr1	226543764	226614230
STUM_chr1_226543764_226614230	0/0	t0017	7334	4	0	0	2	0	2	copy fasta	STUM	chr1	226543764	226614230
STUM_chr1_226543764_226614230	0/0	t0018	7335	4	0	2	0	2	0	copy fasta	STUM	chr1	226543764	226614230
STUM_chr1_226543764_226614230	0/0	t0019	7335	4	0	2	0	1	1	copy fasta	STUM	chr1	226543764	226614230
STUM_chr1_226543764_226614230	0/0	t0020	7332	3	0	0	3	0	0	copy fasta	STUM	chr1	226543764	226614230
STUM_chr1_226543764_226614230	0/0	t0021	7332	2	2	0	0	0	0	copy fasta	STUM	chr1	226543764	226614230
STUM_chr1_226543764_226614230	0/0	t0022	7333	2	0	0	2	0	0	copy fasta	STUM	chr1	226543764	226614230
STUM_chr1_226543764_226614230	0/0	t0023	7333	2	0	0	2	0	0	copy fasta	STUM	chr1	226543764	226614230
STUM_chr1_226543764_226614230	0/0	t0024	7333	2	0	0	2	0	0	copy fasta	STUM	chr1	226543764	226614230
STUM_chr1_226543764_226614230	0/0	t0025	7333	2	2	0	0	0	0	copy fasta	STUM	chr1	226543764	226614230
STUM_chr1_226543764_226614230	0/0	t0026	7335	2	2	0	0	0	0	copy fasta	STUM	chr1	226543764	226614230
STUM_chr1_226543764_226614230	0/0	t0027	7332	2	2	0	0	0	0	copy fasta	STUM	chr1	226543764	226614230
STUM_chr1_226543764_226614230	0/0	t0028	7332	2	0	2	0	0	0	copy fasta	STUM	chr1	226543764	226614230
STUM_chr1_226543764_226614230	0/0	t0029	7332	2	0	0	2	0	0	copy fasta	STUM	chr1	226543764	226614230
STUM_chr1_226543764_226614230	0/0	t0030	7332	2	0	0	2	0	0	copy fasta	STUM	chr1	226543764	226614230
STUM_chr1_226543764_226614230	0/0	t0031	7332	2	2	0	0	0	0	copy fasta	STUM	chr1	226543764	226614230
STUM_chr1_226543764_226614230	0/0	t0032	7335	2	0	0	0	0	2	copy fasta	STUM	chr1	226543764	226614230
STUM_chr1_226543764_226614230	0/0	t0033	7334	2	2	0	0	0	0	copy fasta	STUM	chr1	226543764	226614230
STUM_chr1_226543764_226614230	0/0	t0034	7334	2	1	0	0	1	0	copy fasta	STUM	chr1	226543764	226614230
STUM_chr1_226543764_226614230	0/0	t0035	7335	2	2	0	0	0	0	copy fasta	STUM	chr1	226543764	226614230
STUM_chr1_226543764_226614230	0/0	t0036	7332	2	1	1	0	0	0	copy fasta	STUM	chr1	226543764	226614230
STUM_chr1_226543764_226614230	0/0	t0037	7335	2	2	0	0	0	0	copy fasta	STUM	chr1	226543764	226614230
STUM_chr1_226543764_226614230	0/0	t0038	7335	1	1	0	0	0	0	copy fasta	STUM	chr1	226543764	226614230
STUM_chr1_226543764_226614230	0/0	t0039	7333	1	1	0	0	0	0	copy fasta	STUM	chr1	226543764	226614230
STUM_chr1_226543764_226614230	0/0	t0040	7333	1	0	0	1	0	0	copy fasta	STUM	chr1	226543764	226614230
STUM_chr1_226543764_226614230	0/0	t0041	7333	1	0	0	1	0	0	copy fasta	STUM	chr1	226543764	226614230