JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
STUM_chr1_226543764_226614230	0/0	t0042	7333	1	0	0	1	0	0	copy fasta	STUM	chr1	226543764	226614230
STUM_chr1_226543764_226614230	0/0	t0043	7333	1	0	0	1	0	0	copy fasta	STUM	chr1	226543764	226614230
STUM_chr1_226543764_226614230	0/0	t0044	7333	1	1	0	0	0	0	copy fasta	STUM	chr1	226543764	226614230
STUM_chr1_226543764_226614230	0/0	t0045	7333	1	0	0	1	0	0	copy fasta	STUM	chr1	226543764	226614230
STUM_chr1_226543764_226614230	0/0	t0046	7335	1	1	0	0	0	0	copy fasta	STUM	chr1	226543764	226614230
STUM_chr1_226543764_226614230	0/0	t0047	7333	1	1	0	0	0	0	copy fasta	STUM	chr1	226543764	226614230
STUM_chr1_226543764_226614230	0/0	t0048	7332	1	0	0	1	0	0	copy fasta	STUM	chr1	226543764	226614230
STUM_chr1_226543764_226614230	0/0	t0049	7332	1	1	0	0	0	0	copy fasta	STUM	chr1	226543764	226614230
STUM_chr1_226543764_226614230	0/0	t0050	7332	1	0	0	1	0	0	copy fasta	STUM	chr1	226543764	226614230
STUM_chr1_226543764_226614230	0/0	t0051	7335	1	1	0	0	0	0	copy fasta	STUM	chr1	226543764	226614230
STUM_chr1_226543764_226614230	0/0	t0052	7332	1	0	1	0	0	0	copy fasta	STUM	chr1	226543764	226614230
STUM_chr1_226543764_226614230	0/0	t0053	7335	1	1	0	0	0	0	copy fasta	STUM	chr1	226543764	226614230
STUM_chr1_226543764_226614230	0/0	t0054	7332	1	0	1	0	0	0	copy fasta	STUM	chr1	226543764	226614230
STUM_chr1_226543764_226614230	0/0	t0055	7332	1	0	0	0	0	1	copy fasta	STUM	chr1	226543764	226614230
STUM_chr1_226543764_226614230	0/0	t0056	7335	1	0	0	1	0	0	copy fasta	STUM	chr1	226543764	226614230
STUM_chr1_226543764_226614230	0/0	t0057	7335	1	0	1	0	0	0	copy fasta	STUM	chr1	226543764	226614230
STUM_chr1_226543764_226614230	0/0	t0058	7335	1	0	0	0	0	1	copy fasta	STUM	chr1	226543764	226614230
STUM_chr1_226543764_226614230	0/0	t0059	7334	1	1	0	0	0	0	copy fasta	STUM	chr1	226543764	226614230
STUM_chr1_226543764_226614230	0/0	t0060	7335	1	1	0	0	0	0	copy fasta	STUM	chr1	226543764	226614230
STUM_chr1_226543764_226614230	0/0	t0061	7335	1	0	0	0	0	1	copy fasta	STUM	chr1	226543764	226614230
STUM_chr1_226543764_226614230	0/0	t0062	7332	1	0	0	0	1	0	copy fasta	STUM	chr1	226543764	226614230
STUM_chr1_226543764_226614230	0/0	t0063	7335	1	0	1	0	0	0	copy fasta	STUM	chr1	226543764	226614230
STUM_chr1_226543764_226614230	0/0	t0064	7335	1	1	0	0	0	0	copy fasta	STUM	chr1	226543764	226614230
STUM_chr1_226543764_226614230	0/0	t0065	7335	1	0	0	0	0	1	copy fasta	STUM	chr1	226543764	226614230
STUM_chr1_226543764_226614230	0/0	t0066	7335	1	0	0	0	0	1	copy fasta	STUM	chr1	226543764	226614230
STUM_chr1_226543764_226614230	0/0	t0067	7335	1	1	0	0	0	0	copy fasta	STUM	chr1	226543764	226614230
STUM_chr1_226543764_226614230	0/0	t0068	7335	1	1	0	0	0	0	copy fasta	STUM	chr1	226543764	226614230
STUM_chr1_226543764_226614230	0/0	t0069	7335	1	1	0	0	0	0	copy fasta	STUM	chr1	226543764	226614230
STUM_chr1_226543764_226614230	0/0	t0070	7332	1	0	1	0	0	0	copy fasta	STUM	chr1	226543764	226614230
STUM_chr1_226543764_226614230	0/0	t0071	7335	1	0	0	1	0	0	copy fasta	STUM	chr1	226543764	226614230
STUM_chr1_226543764_226614230	0/0	t0072	7333	1	0	1	0	0	0	copy fasta	STUM	chr1	226543764	226614230
STUM_chr1_226543764_226614230	0/0	t0073	7333	1	0	1	0	0	0	copy fasta	STUM	chr1	226543764	226614230
STUM_chr1_226543764_226614230	0/0	t0074	7335	1	1	0	0	0	0	copy fasta	STUM	chr1	226543764	226614230
STX10_chr19_13139058_13155375	0/0	t0001	555	172	24	41	71	11	25	copy fasta	STX10	chr19	13139058	13155375
STX10_chr19_13139058_13155375	1/1	t0002	555	115	51	20	20	3	19	copy fasta	STX10	chr19	13139058	13155375
STX10_chr19_13139058_13155375	0/0	t0003	555	26	15	6	5	0	0	copy fasta	STX10	chr19	13139058	13155375
STX10_chr19_13139058_13155375	0/0	t0004	555	4	3	1	0	0	0	copy fasta	STX10	chr19	13139058	13155375
STX10_chr19_13139058_13155375	0/0	t0005	556	3	0	0	3	0	0	copy fasta	STX10	chr19	13139058	13155375
STX10_chr19_13139058_13155375	0/0	t0006	555	3	0	0	3	0	0	copy fasta	STX10	chr19	13139058	13155375
STX10_chr19_13139058_13155375	0/0	t0007	556	1	0	0	1	0	0	copy fasta	STX10	chr19	13139058	13155375
STX10_chr19_13139058_13155375	0/0	t0008	555	1	1	0	0	0	0	copy fasta	STX10	chr19	13139058	13155375
STX10_chr19_13139058_13155375	0/0	t0009	556	1	1	0	0	0	0	copy fasta	STX10	chr19	13139058	13155375
STX10_chr19_13139058_13155375	0/0	t0010	555	1	0	0	1	0	0	copy fasta	STX10	chr19	13139058	13155375
STX10_chr19_13139058_13155375	0/0	t0011	555	1	1	0	0	0	0	copy fasta	STX10	chr19	13139058	13155375
STX11_chr6_144145517_144196939	0/1	t0001	4643	86	9	17	46	5	8	copy fasta	STX11	chr6	144145517	144196939
STX11_chr6_144145517_144196939	0/0	t0002	4642	77	5	15	43	3	11	copy fasta	STX11	chr6	144145517	144196939
STX11_chr6_144145517_144196939	0/0	t0003	4644	56	9	1	44	1	1	copy fasta	STX11	chr6	144145517	144196939
STX11_chr6_144145517_144196939	0/0	t0004	4643	16	2	10	3	1	0	copy fasta	STX11	chr6	144145517	144196939
STX11_chr6_144145517_144196939	0/0	t0005	4644	12	11	1	0	0	0	copy fasta	STX11	chr6	144145517	144196939
STX11_chr6_144145517_144196939	0/0	t0006	4639	9	0	0	9	0	0	copy fasta	STX11	chr6	144145517	144196939