JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	SAS	tseq	genename	chr	start	end
STX11_chr6_144145517_144196939	0/0	t0007	4643	7	7	0	0	0	copy fasta	STX11	chr6	144145517	144196939
STX11_chr6_144145517_144196939	0/0	t0008	4645	6	6	0	0	0	copy fasta	STX11	chr6	144145517	144196939
STX11_chr6_144145517_144196939	0/0	t0009	4645	6	5	1	0	0	copy fasta	STX11	chr6	144145517	144196939
STX11_chr6_144145517_144196939	0/0	t0010	4642	6	0	0	6	0	copy fasta	STX11	chr6	144145517	144196939
STX11_chr6_144145517_144196939	0/0	t0011	4637	5	0	0	5	0	copy fasta	STX11	chr6	144145517	144196939
STX11_chr6_144145517_144196939	0/0	t0012	4645	4	0	0	4	0	copy fasta	STX11	chr6	144145517	144196939
STX11_chr6_144145517_144196939	0/0	t0013	4643	4	0	0	4	0	copy fasta	STX11	chr6	144145517	144196939
STX11_chr6_144145517_144196939	0/0	t0014	4643	4	0	3	1	0	copy fasta	STX11	chr6	144145517	144196939
STX11_chr6_144145517_144196939	0/0	t0015	4644	4	3	1	0	0	copy fasta	STX11	chr6	144145517	144196939
STX11_chr6_144145517_144196939	0/0	t0016	4645	3	0	0	3	0	copy fasta	STX11	chr6	144145517	144196939
STX11_chr6_144145517_144196939	0/0	t0017	4642	3	3	0	0	0	copy fasta	STX11	chr6	144145517	144196939
STX11_chr6_144145517_144196939	0/0	t0018	4643	3	3	0	0	0	copy fasta	STX11	chr6	144145517	144196939
STX11_chr6_144145517_144196939	0/0	t0019	4643	3	3	0	0	0	copy fasta	STX11	chr6	144145517	144196939
STX11_chr6_144145517_144196939	0/0	t0020	4645	3	3	0	0	0	copy fasta	STX11	chr6	144145517	144196939
STX11_chr6_144145517_144196939	0/0	t0021	4643	2	0	1	1	0	copy fasta	STX11	chr6	144145517	144196939
STX11_chr6_144145517_144196939	0/0	t0022	4642	2	2	0	0	0	copy fasta	STX11	chr6	144145517	144196939
STX11_chr6_144145517_144196939	0/0	t0023	4644	2	2	0	0	0	copy fasta	STX11	chr6	144145517	144196939
STX11_chr6_144145517_144196939	0/0	t0024	4642	2	2	0	0	0	copy fasta	STX11	chr6	144145517	144196939
STX11_chr6_144145517_144196939	0/0	t0025	4644	2	0	0	2	0	copy fasta	STX11	chr6	144145517	144196939
STX11_chr6_144145517_144196939	0/0	t0026	4644	2	1	0	1	0	copy fasta	STX11	chr6	144145517	144196939
STX11_chr6_144145517_144196939	0/0	t0027	4644	2	0	0	2	0	copy fasta	STX11	chr6	144145517	144196939
STX11_chr6_144145517_144196939	0/0	t0028	4642	2	0	2	0	0	copy fasta	STX11	chr6	144145517	144196939
STX11_chr6_144145517_144196939	0/0	t0029	4644	2	2	0	0	0	copy fasta	STX11	chr6	144145517	144196939
STX11_chr6_144145517_144196939	0/0	t0030	4645	1	1	0	0	0	copy fasta	STX11	chr6	144145517	144196939
STX11_chr6_144145517_144196939	0/0	t0031	4644	1	0	0	1	0	copy fasta	STX11	chr6	144145517	144196939
STX11_chr6_144145517_144196939	0/0	t0032	4645	1	0	1	0	0	copy fasta	STX11	chr6	144145517	144196939
STX11_chr6_144145517_144196939	0/0	t0033	4644	1	0	0	0	1	copy fasta	STX11	chr6	144145517	144196939
STX11_chr6_144145517_144196939	0/0	t0034	4644	1	0	0	1	0	copy fasta	STX11	chr6	144145517	144196939
STX11_chr6_144145517_144196939	0/0	t0035	4644	1	0	0	1	0	copy fasta	STX11	chr6	144145517	144196939
STX11_chr6_144145517_144196939	0/0	t0036	4643	1	0	1	0	0	copy fasta	STX11	chr6	144145517	144196939
STX11_chr6_144145517_144196939	0/0	t0037	4645	1	0	0	1	0	copy fasta	STX11	chr6	144145517	144196939
STX11_chr6_144145517_144196939	0/0	t0038	4644	1	0	0	0	1	copy fasta	STX11	chr6	144145517	144196939
STX11_chr6_144145517_144196939	0/0	t0039	4645	1	0	0	1	0	copy fasta	STX11	chr6	144145517	144196939
STX11_chr6_144145517_144196939	0/0	t0040	4642	1	1	0	0	0	copy fasta	STX11	chr6	144145517	144196939
STX11_chr6_144145517_144196939	0/0	t0041	4644	1	0	0	1	0	copy fasta	STX11	chr6	144145517	144196939
STX11_chr6_144145517_144196939	0/0	t0042	4642	1	1	0	0	0	copy fasta	STX11	chr6	144145517	144196939
STX11_chr6_144145517_144196939	0/0	t0043	4644	1	0	0	1	0	copy fasta	STX11	chr6	144145517	144196939
STX11_chr6_144145517_144196939	0/0	t0044	4643	1	0	0	1	0	copy fasta	STX11	chr6	144145517	144196939
STX11_chr6_144145517_144196939	0/0	t0045	4642	1	1	0	0	0	copy fasta	STX11	chr6	144145517	144196939
STX11_chr6_144145517_144196939	0/0	t0046	4642	1	0	0	0	1	copy fasta	STX11	chr6	144145517	144196939
STX11_chr6_144145517_144196939	0/0	t0047	4644	1	0	0	1	0	copy fasta	STX11	chr6	144145517	144196939
STX11_chr6_144145517_144196939	0/0	t0048	4643	1	0	1	0	0	copy fasta	STX11	chr6	144145517	144196939
STX11_chr6_144145517_144196939	0/0	t0049	4643	1	1	0	0	0	copy fasta	STX11	chr6	144145517	144196939
STX11_chr6_144145517_144196939	0/0	t0050	4629	1	0	1	0	0	copy fasta	STX11	chr6	144145517	144196939
STX11_chr6_144145517_144196939	0/0	t0051	4643	1	1	0	0	0	copy fasta	STX11	chr6	144145517	144196939
STX11_chr6_144145517_144196939	0/0	t0052	4644	1	0	1	0	0	copy fasta	STX11	chr6	144145517	144196939
STX11_chr6_144145517_144196939	0/0	t0053	4643	1	1	0	0	0	copy fasta	STX11	chr6	144145517	144196939
STX11_chr6_144145517_144196939	0/0	t0054	4644	1	1	0	0	0	copy fasta	STX11	chr6	144145517	144196939
STX11_chr6_144145517_144196939	0/0	t0055	4645	1	1	0	0	0	copy fasta	STX11	chr6	144145517	144196939
STX11_chr6_144145517_144196939	0/0	t0056	4642	1	0	0	1	0	copy fasta	STX11	chr6	144145517	144196939