JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
BMP8A_chr1_39486636_39534869	0/0	t0038	4432	1	0	0	1	0	0	copy fasta	BMP8A	chr1	39486636	39534869
BMP8A_chr1_39486636_39534869	0/0	t0039	4431	1	1	0	0	0	0	copy fasta	BMP8A	chr1	39486636	39534869
BMP8A_chr1_39486636_39534869	0/0	t0040	4432	1	0	0	1	0	0	copy fasta	BMP8A	chr1	39486636	39534869
BMP8A_chr1_39486636_39534869	0/0	t0041	4432	1	0	0	1	0	0	copy fasta	BMP8A	chr1	39486636	39534869
BMP8A_chr1_39486636_39534869	0/0	t0042	4432	1	1	0	0	0	0	copy fasta	BMP8A	chr1	39486636	39534869
BMP8A_chr1_39486636_39534869	0/0	t0043	4432	1	0	1	0	0	0	copy fasta	BMP8A	chr1	39486636	39534869
BMP8A_chr1_39486636_39534869	0/0	t0044	4432	1	0	0	0	0	1	copy fasta	BMP8A	chr1	39486636	39534869
BMP8A_chr1_39486636_39534869	0/0	t0045	4433	1	0	0	0	0	1	copy fasta	BMP8A	chr1	39486636	39534869
BMP8A_chr1_39486636_39534869	0/0	t0046	4433	1	1	0	0	0	0	copy fasta	BMP8A	chr1	39486636	39534869
BMP8A_chr1_39486636_39534869	0/0	t0047	4433	1	1	0	0	0	0	copy fasta	BMP8A	chr1	39486636	39534869
BMP8A_chr1_39486636_39534869	0/0	t0048	4427	1	1	0	0	0	0	copy fasta	BMP8A	chr1	39486636	39534869
BMP8A_chr1_39486636_39534869	0/0	t0049	4427	1	1	0	0	0	0	copy fasta	BMP8A	chr1	39486636	39534869
BMP8A_chr1_39486636_39534869	0/0	t0050	4428	1	0	0	1	0	0	copy fasta	BMP8A	chr1	39486636	39534869
BMP8A_chr1_39486636_39534869	0/0	t0051	4428	1	0	0	1	0	0	copy fasta	BMP8A	chr1	39486636	39534869
BMP8A_chr1_39486636_39534869	0/0	t0052	4427	1	1	0	0	0	0	copy fasta	BMP8A	chr1	39486636	39534869
BMP8A_chr1_39486636_39534869	0/0	t0053	4428	1	0	0	1	0	0	copy fasta	BMP8A	chr1	39486636	39534869
BMP8A_chr1_39486636_39534869	0/0	t0054	4429	1	0	0	1	0	0	copy fasta	BMP8A	chr1	39486636	39534869
BMP8A_chr1_39486636_39534869	0/0	t0055	4432	1	0	0	1	0	0	copy fasta	BMP8A	chr1	39486636	39534869
BMP8A_chr1_39486636_39534869	0/0	t0056	4428	1	1	0	0	0	0	copy fasta	BMP8A	chr1	39486636	39534869
BMP8A_chr1_39486636_39534869	0/0	t0057	4432	1	1	0	0	0	0	copy fasta	BMP8A	chr1	39486636	39534869
BMP8A_chr1_39486636_39534869	0/0	t0058	4427	1	1	0	0	0	0	copy fasta	BMP8A	chr1	39486636	39534869
BMP8A_chr1_39486636_39534869	0/0	t0059	4427	1	0	0	0	0	1	copy fasta	BMP8A	chr1	39486636	39534869
BMP8A_chr1_39486636_39534869	0/0	t0060	4411	1	1	0	0	0	0	copy fasta	BMP8A	chr1	39486636	39534869
BMP8A_chr1_39486636_39534869	0/0	t0061	4428	1	1	0	0	0	0	copy fasta	BMP8A	chr1	39486636	39534869
BMP8B_chr1_39752182_39793865	1/0	t0001	3618	146	21	20	84	4	16	copy fasta	BMP8B	chr1	39752182	39793865
BMP8B_chr1_39752182_39793865	0/0	t0002	3618	58	6	15	30	1	6	copy fasta	BMP8B	chr1	39752182	39793865
BMP8B_chr1_39752182_39793865	0/0	t0003	3618	30	0	2	19	4	5	copy fasta	BMP8B	chr1	39752182	39793865
BMP8B_chr1_39752182_39793865	0/0	t0004	3618	29	11	8	5	2	3	copy fasta	BMP8B	chr1	39752182	39793865
BMP8B_chr1_39752182_39793865	0/0	t0005	3618	26	0	1	21	1	3	copy fasta	BMP8B	chr1	39752182	39793865
BMP8B_chr1_39752182_39793865	0/0	t0006	3618	26	25	1	0	0	0	copy fasta	BMP8B	chr1	39752182	39793865
BMP8B_chr1_39752182_39793865	0/0	t0007	3618	23	0	0	23	0	0	copy fasta	BMP8B	chr1	39752182	39793865
BMP8B_chr1_39752182_39793865	0/0	t0008	3618	20	1	8	5	1	5	copy fasta	BMP8B	chr1	39752182	39793865
BMP8B_chr1_39752182_39793865	0/0	t0009	3618	15	5	5	0	3	2	copy fasta	BMP8B	chr1	39752182	39793865
BMP8B_chr1_39752182_39793865	0/0	t0010	3618	8	7	1	0	0	0	copy fasta	BMP8B	chr1	39752182	39793865
BMP8B_chr1_39752182_39793865	0/0	t0011	3618	7	0	0	7	0	0	copy fasta	BMP8B	chr1	39752182	39793865
BMP8B_chr1_39752182_39793865	0/0	t0012	3618	6	5	1	0	0	0	copy fasta	BMP8B	chr1	39752182	39793865
BMP8B_chr1_39752182_39793865	0/0	t0013	3618	4	0	3	0	0	1	copy fasta	BMP8B	chr1	39752182	39793865
BMP8B_chr1_39752182_39793865	0/0	t0014	3618	3	0	0	3	0	0	copy fasta	BMP8B	chr1	39752182	39793865
BMP8B_chr1_39752182_39793865	0/0	t0015	3618	2	2	0	0	0	0	copy fasta	BMP8B	chr1	39752182	39793865
BMP8B_chr1_39752182_39793865	0/0	t0016	3618	2	2	0	0	0	0	copy fasta	BMP8B	chr1	39752182	39793865
BMP8B_chr1_39752182_39793865	0/0	t0017	3616	2	2	0	0	0	0	copy fasta	BMP8B	chr1	39752182	39793865
BMP8B_chr1_39752182_39793865	0/0	t0018	3618	2	0	2	0	0	0	copy fasta	BMP8B	chr1	39752182	39793865
BMP8B_chr1_39752182_39793865	0/0	t0019	3618	1	0	0	1	0	0	copy fasta	BMP8B	chr1	39752182	39793865
BMP8B_chr1_39752182_39793865	0/0	t0020	3618	1	1	0	0	0	0	copy fasta	BMP8B	chr1	39752182	39793865
BMP8B_chr1_39752182_39793865	0/0	t0021	3618	1	0	0	1	0	0	copy fasta	BMP8B	chr1	39752182	39793865
BMP8B_chr1_39752182_39793865	0/0	t0022	3618	1	0	0	1	0	0	copy fasta	BMP8B	chr1	39752182	39793865
BMP8B_chr1_39752182_39793865	0/0	t0023	3618	1	0	0	1	0	0	copy fasta	BMP8B	chr1	39752182	39793865
BMP8B_chr1_39752182_39793865	0/0	t0024	3618	1	0	0	1	0	0	copy fasta	BMP8B	chr1	39752182	39793865
BMP8B_chr1_39752182_39793865	0/0	t0025	3618	1	0	0	1	0	0	copy fasta	BMP8B	chr1	39752182	39793865
BMP8B_chr1_39752182_39793865	0/0	t0026	3618	1	0	0	0	0	1	copy fasta	BMP8B	chr1	39752182	39793865