JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
STX11_chr6_144145517_144196939	0/0	t0057	4642	1	0	0	0	0	1	copy fasta	STX11	chr6	144145517	144196939
STX11_chr6_144145517_144196939	1/0	t0058	4641	1	0	0	0	0	0	copy fasta	STX11	chr6	144145517	144196939
STX11_chr6_144145517_144196939	0/0	t0059	4643	1	0	0	1	0	0	copy fasta	STX11	chr6	144145517	144196939
STX11_chr6_144145517_144196939	0/0	t0060	4643	1	0	0	0	0	1	copy fasta	STX11	chr6	144145517	144196939
STX11_chr6_144145517_144196939	0/0	t0061	4642	1	0	0	0	0	1	copy fasta	STX11	chr6	144145517	144196939
STX11_chr6_144145517_144196939	0/0	t0062	4643	1	0	0	1	0	0	copy fasta	STX11	chr6	144145517	144196939
STX11_chr6_144145517_144196939	0/0	t0063	4643	1	1	0	0	0	0	copy fasta	STX11	chr6	144145517	144196939
STX11_chr6_144145517_144196939	0/0	t0064	4640	1	0	0	1	0	0	copy fasta	STX11	chr6	144145517	144196939
STX11_chr6_144145517_144196939	0/0	t0065	4644	1	1	0	0	0	0	copy fasta	STX11	chr6	144145517	144196939
STX11_chr6_144145517_144196939	0/0	t0066	4644	1	0	1	0	0	0	copy fasta	STX11	chr6	144145517	144196939
STX11_chr6_144145517_144196939	0/0	t0067	4643	1	0	0	1	0	0	copy fasta	STX11	chr6	144145517	144196939
STX11_chr6_144145517_144196939	0/0	t0068	4645	1	1	0	0	0	0	copy fasta	STX11	chr6	144145517	144196939
STX11_chr6_144145517_144196939	0/0	t0069	4644	1	1	0	0	0	0	copy fasta	STX11	chr6	144145517	144196939
STX11_chr6_144145517_144196939	0/0	t0070	4643	1	1	0	0	0	0	copy fasta	STX11	chr6	144145517	144196939
STX11_chr6_144145517_144196939	0/0	t0071	4644	1	1	0	0	0	0	copy fasta	STX11	chr6	144145517	144196939
STX11_chr6_144145517_144196939	0/0	t0072	4643	1	1	0	0	0	0	copy fasta	STX11	chr6	144145517	144196939
STX12_chr1_27768219_27829443	1/1	t0001	2204	119	30	18	52	6	11	copy fasta	STX12	chr1	27768219	27829443
STX12_chr1_27768219_27829443	0/0	t0002	2204	48	3	0	40	0	5	copy fasta	STX12	chr1	27768219	27829443
STX12_chr1_27768219_27829443	0/0	t0003	2204	26	22	4	0	0	0	copy fasta	STX12	chr1	27768219	27829443
STX12_chr1_27768219_27829443	0/0	t0004	2204	15	12	3	0	0	0	copy fasta	STX12	chr1	27768219	27829443
STX12_chr1_27768219_27829443	0/0	t0005	2204	6	6	0	0	0	0	copy fasta	STX12	chr1	27768219	27829443
STX12_chr1_27768219_27829443	0/0	t0006	2204	4	2	1	0	0	1	copy fasta	STX12	chr1	27768219	27829443
STX12_chr1_27768219_27829443	0/0	t0007	2204	4	4	0	0	0	0	copy fasta	STX12	chr1	27768219	27829443
STX12_chr1_27768219_27829443	0/0	t0008	2204	2	2	0	0	0	0	copy fasta	STX12	chr1	27768219	27829443
STX12_chr1_27768219_27829443	0/0	t0009	2204	1	1	0	0	0	0	copy fasta	STX12	chr1	27768219	27829443
STX12_chr1_27768219_27829443	0/0	t0010	2204	1	1	0	0	0	0	copy fasta	STX12	chr1	27768219	27829443
STX12_chr1_27768219_27829443	0/0	t0011	2204	1	0	0	0	0	1	copy fasta	STX12	chr1	27768219	27829443
STX12_chr1_27768219_27829443	0/0	t0012	2204	1	1	0	0	0	0	copy fasta	STX12	chr1	27768219	27829443
STX16_chr20_58646283_58684526	0/0	t0001	3960	74	6	23	34	2	9	copy fasta	STX16	chr20	58646283	58684526
STX16_chr20_58646283_58684526	0/0	t0002	3963	65	8	16	26	3	12	copy fasta	STX16	chr20	58646283	58684526
STX16_chr20_58646283_58684526	0/0	t0003	3963	38	2	5	25	3	3	copy fasta	STX16	chr20	58646283	58684526
STX16_chr20_58646283_58684526	0/0	t0004	3963	26	14	6	5	0	1	copy fasta	STX16	chr20	58646283	58684526
STX16_chr20_58646283_58684526	0/0	t0005	3960	26	2	0	23	0	1	copy fasta	STX16	chr20	58646283	58684526
STX16_chr20_58646283_58684526	0/0	t0006	3959	10	10	0	0	0	0	copy fasta	STX16	chr20	58646283	58684526
STX16_chr20_58646283_58684526	0/0	t0007	3958	9	0	3	3	0	3	copy fasta	STX16	chr20	58646283	58684526
STX16_chr20_58646283_58684526	0/0	t0008	3960	8	0	0	7	0	1	copy fasta	STX16	chr20	58646283	58684526
STX16_chr20_58646283_58684526	0/1	t0009	3960	8	4	2	1	0	0	copy fasta	STX16	chr20	58646283	58684526
STX16_chr20_58646283_58684526	0/0	t0010	3960	7	7	0	0	0	0	copy fasta	STX16	chr20	58646283	58684526
STX16_chr20_58646283_58684526	0/0	t0011	3963	6	1	1	0	1	3	copy fasta	STX16	chr20	58646283	58684526
STX16_chr20_58646283_58684526	0/0	t0012	3963	6	0	0	5	0	1	copy fasta	STX16	chr20	58646283	58684526
STX16_chr20_58646283_58684526	0/0	t0013	3963	5	5	0	0	0	0	copy fasta	STX16	chr20	58646283	58684526
STX16_chr20_58646283_58684526	0/0	t0014	3962	5	3	1	1	0	0	copy fasta	STX16	chr20	58646283	58684526
STX16_chr20_58646283_58684526	0/0	t0015	3963	5	1	2	2	0	0	copy fasta	STX16	chr20	58646283	58684526
STX16_chr20_58646283_58684526	0/0	t0016	3964	5	1	0	4	0	0	copy fasta	STX16	chr20	58646283	58684526
STX16_chr20_58646283_58684526	0/0	t0017	3963	4	0	2	0	2	0	copy fasta	STX16	chr20	58646283	58684526
STX16_chr20_58646283_58684526	1/0	t0018	3960	4	0	0	0	1	2	copy fasta	STX16	chr20	58646283	58684526
STX16_chr20_58646283_58684526	0/0	t0019	3960	4	0	0	2	1	1	copy fasta	STX16	chr20	58646283	58684526
STX16_chr20_58646283_58684526	0/0	t0020	3960	3	3	0	0	0	0	copy fasta	STX16	chr20	58646283	58684526
STX16_chr20_58646283_58684526	0/0	t0021	3960	3	3	0	0	0	0	copy fasta	STX16	chr20	58646283	58684526
STX16_chr20_58646283_58684526	0/0	t0022	3963	3	0	1	2	0	0	copy fasta	STX16	chr20	58646283	58684526