JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
STX16_chr20_58646283_58684526	0/0	t0023	3963	2	0	0	2	0	0	copy fasta	STX16	chr20	58646283	58684526
STX16_chr20_58646283_58684526	0/0	t0024	3962	2	2	0	0	0	0	copy fasta	STX16	chr20	58646283	58684526
STX16_chr20_58646283_58684526	0/0	t0025	3960	2	2	0	0	0	0	copy fasta	STX16	chr20	58646283	58684526
STX16_chr20_58646283_58684526	0/0	t0026	3960	2	1	1	0	0	0	copy fasta	STX16	chr20	58646283	58684526
STX16_chr20_58646283_58684526	0/0	t0027	3963	2	2	0	0	0	0	copy fasta	STX16	chr20	58646283	58684526
STX16_chr20_58646283_58684526	0/0	t0028	3960	2	0	0	2	0	0	copy fasta	STX16	chr20	58646283	58684526
STX16_chr20_58646283_58684526	0/0	t0029	3958	2	0	0	2	0	0	copy fasta	STX16	chr20	58646283	58684526
STX16_chr20_58646283_58684526	0/0	t0030	3960	2	2	0	0	0	0	copy fasta	STX16	chr20	58646283	58684526
STX16_chr20_58646283_58684526	0/0	t0031	3963	2	0	0	0	0	2	copy fasta	STX16	chr20	58646283	58684526
STX16_chr20_58646283_58684526	0/0	t0032	3960	2	0	0	0	1	1	copy fasta	STX16	chr20	58646283	58684526
STX16_chr20_58646283_58684526	0/0	t0033	3964	2	0	0	2	0	0	copy fasta	STX16	chr20	58646283	58684526
STX16_chr20_58646283_58684526	0/0	t0034	3962	2	0	0	2	0	0	copy fasta	STX16	chr20	58646283	58684526
STX16_chr20_58646283_58684526	0/0	t0035	3962	2	0	1	1	0	0	copy fasta	STX16	chr20	58646283	58684526
STX16_chr20_58646283_58684526	0/0	t0036	3958	2	0	1	0	0	1	copy fasta	STX16	chr20	58646283	58684526
STX16_chr20_58646283_58684526	0/0	t0037	3963	2	0	0	0	0	2	copy fasta	STX16	chr20	58646283	58684526
STX16_chr20_58646283_58684526	0/0	t0038	3960	1	0	0	1	0	0	copy fasta	STX16	chr20	58646283	58684526
STX16_chr20_58646283_58684526	0/0	t0039	3963	1	0	0	1	0	0	copy fasta	STX16	chr20	58646283	58684526
STX16_chr20_58646283_58684526	0/0	t0040	3964	1	0	1	0	0	0	copy fasta	STX16	chr20	58646283	58684526
STX16_chr20_58646283_58684526	0/0	t0041	3963	1	0	0	0	0	1	copy fasta	STX16	chr20	58646283	58684526
STX16_chr20_58646283_58684526	0/0	t0042	3963	1	0	1	0	0	0	copy fasta	STX16	chr20	58646283	58684526
STX16_chr20_58646283_58684526	0/0	t0043	3960	1	0	0	1	0	0	copy fasta	STX16	chr20	58646283	58684526
STX16_chr20_58646283_58684526	0/0	t0044	3963	1	1	0	0	0	0	copy fasta	STX16	chr20	58646283	58684526
STX16_chr20_58646283_58684526	0/0	t0045	3963	1	1	0	0	0	0	copy fasta	STX16	chr20	58646283	58684526
STX16_chr20_58646283_58684526	0/0	t0046	3960	1	1	0	0	0	0	copy fasta	STX16	chr20	58646283	58684526
STX16_chr20_58646283_58684526	0/0	t0047	3963	1	1	0	0	0	0	copy fasta	STX16	chr20	58646283	58684526
STX16_chr20_58646283_58684526	0/0	t0048	3960	1	0	0	1	0	0	copy fasta	STX16	chr20	58646283	58684526
STX16_chr20_58646283_58684526	0/0	t0049	3963	1	0	1	0	0	0	copy fasta	STX16	chr20	58646283	58684526
STX16_chr20_58646283_58684526	0/0	t0050	3959	1	0	1	0	0	0	copy fasta	STX16	chr20	58646283	58684526
STX16_chr20_58646283_58684526	0/0	t0051	3960	1	1	0	0	0	0	copy fasta	STX16	chr20	58646283	58684526
STX16_chr20_58646283_58684526	0/0	t0052	3960	1	1	0	0	0	0	copy fasta	STX16	chr20	58646283	58684526
STX16_chr20_58646283_58684526	0/0	t0053	3959	1	1	0	0	0	0	copy fasta	STX16	chr20	58646283	58684526
STX16_chr20_58646283_58684526	0/0	t0054	3960	1	0	0	1	0	0	copy fasta	STX16	chr20	58646283	58684526
STX16_chr20_58646283_58684526	0/0	t0055	3960	1	0	0	1	0	0	copy fasta	STX16	chr20	58646283	58684526
STX16_chr20_58646283_58684526	0/0	t0056	3964	1	0	1	0	0	0	copy fasta	STX16	chr20	58646283	58684526
STX16_chr20_58646283_58684526	0/0	t0057	3963	1	0	0	1	0	0	copy fasta	STX16	chr20	58646283	58684526
STX16_chr20_58646283_58684526	0/0	t0058	3964	1	0	0	1	0	0	copy fasta	STX16	chr20	58646283	58684526
STX16_chr20_58646283_58684526	0/0	t0059	3958	1	0	0	1	0	0	copy fasta	STX16	chr20	58646283	58684526
STX16_chr20_58646283_58684526	0/0	t0060	3963	1	0	0	1	0	0	copy fasta	STX16	chr20	58646283	58684526
STX16_chr20_58646283_58684526	0/0	t0061	3963	1	0	0	0	0	1	copy fasta	STX16	chr20	58646283	58684526
STX16_chr20_58646283_58684526	0/0	t0062	3960	1	0	1	0	0	0	copy fasta	STX16	chr20	58646283	58684526
STX16_chr20_58646283_58684526	0/0	t0063	3960	1	1	0	0	0	0	copy fasta	STX16	chr20	58646283	58684526
STX16_chr20_58646283_58684526	0/0	t0064	3963	1	1	0	0	0	0	copy fasta	STX16	chr20	58646283	58684526
STX16_chr20_58646283_58684526	0/0	t0065	3963	1	0	0	0	0	1	copy fasta	STX16	chr20	58646283	58684526
STX16_chr20_58646283_58684526	0/0	t0066	3963	1	0	1	0	0	0	copy fasta	STX16	chr20	58646283	58684526
STX16_chr20_58646283_58684526	0/0	t0067	3963	1	0	0	1	0	0	copy fasta	STX16	chr20	58646283	58684526
STX17_chr9_99901654_99979534	1/0	t0001	5977	87	12	22	42	3	7	copy fasta	STX17	chr9	99901654	99979534
STX17_chr9_99901654_99979534	0/0	t0002	5974	73	0	22	48	1	2	copy fasta	STX17	chr9	99901654	99979534
STX17_chr9_99901654_99979534	0/0	t0003	5973	40	25	6	6	1	2	copy fasta	STX17	chr9	99901654	99979534
STX17_chr9_99901654_99979534	0/1	t0004	5974	32	14	14	0	2	1	copy fasta	STX17	chr9	99901654	99979534
STX17_chr9_99901654_99979534	0/0	t0005	5974	11	0	0	7	1	3	copy fasta	STX17	chr9	99901654	99979534