JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
STX17_chr9_99901654_99979534	0/0	t0006	5973	4	3	1	0	0	0	copy fasta	STX17	chr9	99901654	99979534
STX17_chr9_99901654_99979534	0/0	t0007	5973	4	0	0	4	0	0	copy fasta	STX17	chr9	99901654	99979534
STX17_chr9_99901654_99979534	0/0	t0008	5973	3	3	0	0	0	0	copy fasta	STX17	chr9	99901654	99979534
STX17_chr9_99901654_99979534	0/0	t0009	5976	3	0	0	2	0	1	copy fasta	STX17	chr9	99901654	99979534
STX17_chr9_99901654_99979534	0/0	t0010	5976	3	3	0	0	0	0	copy fasta	STX17	chr9	99901654	99979534
STX17_chr9_99901654_99979534	0/0	t0011	5976	3	2	0	0	0	1	copy fasta	STX17	chr9	99901654	99979534
STX17_chr9_99901654_99979534	0/0	t0012	5976	2	1	1	0	0	0	copy fasta	STX17	chr9	99901654	99979534
STX17_chr9_99901654_99979534	0/0	t0013	5977	2	0	2	0	0	0	copy fasta	STX17	chr9	99901654	99979534
STX17_chr9_99901654_99979534	0/0	t0014	5973	2	2	0	0	0	0	copy fasta	STX17	chr9	99901654	99979534
STX17_chr9_99901654_99979534	0/0	t0015	5973	2	1	1	0	0	0	copy fasta	STX17	chr9	99901654	99979534
STX17_chr9_99901654_99979534	0/0	t0016	5974	2	2	0	0	0	0	copy fasta	STX17	chr9	99901654	99979534
STX17_chr9_99901654_99979534	0/0	t0017	5973	1	1	0	0	0	0	copy fasta	STX17	chr9	99901654	99979534
STX17_chr9_99901654_99979534	0/0	t0018	5974	1	0	0	1	0	0	copy fasta	STX17	chr9	99901654	99979534
STX17_chr9_99901654_99979534	0/0	t0019	5974	1	0	1	0	0	0	copy fasta	STX17	chr9	99901654	99979534
STX17_chr9_99901654_99979534	0/0	t0020	5974	1	0	0	0	0	1	copy fasta	STX17	chr9	99901654	99979534
STX17_chr9_99901654_99979534	0/0	t0021	5973	1	0	0	0	0	1	copy fasta	STX17	chr9	99901654	99979534
STX17_chr9_99901654_99979534	0/0	t0022	5974	1	0	0	1	0	0	copy fasta	STX17	chr9	99901654	99979534
STX17_chr9_99901654_99979534	0/0	t0023	5973	1	0	1	0	0	0	copy fasta	STX17	chr9	99901654	99979534
STX17_chr9_99901654_99979534	0/0	t0024	5973	1	0	1	0	0	0	copy fasta	STX17	chr9	99901654	99979534
STX17_chr9_99901654_99979534	0/0	t0025	5974	1	0	0	1	0	0	copy fasta	STX17	chr9	99901654	99979534
STX17_chr9_99901654_99979534	0/0	t0026	5977	1	0	0	0	0	1	copy fasta	STX17	chr9	99901654	99979534
STX17_chr9_99901654_99979534	0/0	t0027	5973	1	0	0	0	0	1	copy fasta	STX17	chr9	99901654	99979534
STX17_chr9_99901654_99979534	0/0	t0028	5975	1	0	0	0	0	1	copy fasta	STX17	chr9	99901654	99979534
STX17_chr9_99901654_99979534	0/0	t0029	5975	1	0	0	0	0	1	copy fasta	STX17	chr9	99901654	99979534
STX17_chr9_99901654_99979534	0/0	t0030	5973	1	1	0	0	0	0	copy fasta	STX17	chr9	99901654	99979534
STX17_chr9_99901654_99979534	0/0	t0031	5974	1	1	0	0	0	0	copy fasta	STX17	chr9	99901654	99979534
STX17_chr9_99901654_99979534	0/0	t0032	6014	1	0	0	1	0	0	copy fasta	STX17	chr9	99901654	99979534
STX17_chr9_99901654_99979534	0/0	t0033	5977	1	0	1	0	0	0	copy fasta	STX17	chr9	99901654	99979534
STX17_chr9_99901654_99979534	0/0	t0034	5977	1	1	0	0	0	0	copy fasta	STX17	chr9	99901654	99979534
STX17_chr9_99901654_99979534	0/0	t0035	5977	1	0	1	0	0	0	copy fasta	STX17	chr9	99901654	99979534
STX17_chr9_99901654_99979534	0/0	t0036	5977	1	0	0	0	0	1	copy fasta	STX17	chr9	99901654	99979534
STX17_chr9_99901654_99979534	0/0	t0037	5973	1	0	0	1	0	0	copy fasta	STX17	chr9	99901654	99979534
STX18_chr4_4413968_4547048	1/0	t0001	1151	125	15	37	46	8	18	copy fasta	STX18	chr4	4413968	4547048
STX18_chr4_4413968_4547048	0/0	t0002	1152	82	51	14	11	6	0	copy fasta	STX18	chr4	4413968	4547048
STX18_chr4_4413968_4547048	0/0	t0003	1152	10	8	0	2	0	0	copy fasta	STX18	chr4	4413968	4547048
STX18_chr4_4413968_4547048	0/0	t0004	1152	10	10	0	0	0	0	copy fasta	STX18	chr4	4413968	4547048
STX18_chr4_4413968_4547048	0/0	t0005	1155	5	4	1	0	0	0	copy fasta	STX18	chr4	4413968	4547048
STX18_chr4_4413968_4547048	0/0	t0006	1155	5	3	1	0	0	1	copy fasta	STX18	chr4	4413968	4547048
STX18_chr4_4413968_4547048	0/0	t0007	1152	3	2	1	0	0	0	copy fasta	STX18	chr4	4413968	4547048
STX18_chr4_4413968_4547048	0/0	t0008	1152	3	3	0	0	0	0	copy fasta	STX18	chr4	4413968	4547048
STX18_chr4_4413968_4547048	0/1	t0009	1152	1	0	0	0	0	0	copy fasta	STX18	chr4	4413968	4547048
STX18_chr4_4413968_4547048	0/0	t0010	1151	1	0	0	1	0	0	copy fasta	STX18	chr4	4413968	4547048
STX18_chr4_4413968_4547048	0/0	t0011	1152	1	0	0	0	0	1	copy fasta	STX18	chr4	4413968	4547048
STX19_chr3_94009365_94033597	1/1	t0001	265	390	90	76	162	14	46	copy fasta	STX19	chr3	94009365	94033597
STX19_chr3_94009365_94033597	0/0	t0002	265	2	2	0	0	0	0	copy fasta	STX19	chr3	94009365	94033597
STX1A_chr7_73694210_73724669	1/1	t0001	1236	174	65	30	64	4	9	copy fasta	STX1A	chr7	73694210	73724669
STX1A_chr7_73694210_73724669	0/0	t0002	1236	98	0	11	76	0	11	copy fasta	STX1A	chr7	73694210	73724669
STX1A_chr7_73694210_73724669	0/0	t0003	1236	73	3	23	28	9	10	copy fasta	STX1A	chr7	73694210	73724669
STX1A_chr7_73694210_73724669	0/0	t0004	1236	36	20	7	1	1	7	copy fasta	STX1A	chr7	73694210	73724669
STX1A_chr7_73694210_73724669	0/0	t0005	1236	6	0	1	5	0	0	copy fasta	STX1A	chr7	73694210	73724669