JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
STX1A_chr7_73694210_73724669	0/0	t0006	1236	5	1	3	0	1	0	copy fasta	STX1A	chr7	73694210	73724669
STX1A_chr7_73694210_73724669	0/0	t0007	1236	3	3	0	0	0	0	copy fasta	STX1A	chr7	73694210	73724669
STX1A_chr7_73694210_73724669	0/0	t0008	1236	2	0	1	0	1	0	copy fasta	STX1A	chr7	73694210	73724669
STX1A_chr7_73694210_73724669	0/0	t0009	1236	1	1	0	0	0	0	copy fasta	STX1A	chr7	73694210	73724669
STX1A_chr7_73694210_73724669	0/0	t0010	1236	1	1	0	0	0	0	copy fasta	STX1A	chr7	73694210	73724669
STX1A_chr7_73694210_73724669	0/0	t0011	1236	1	0	0	0	0	1	copy fasta	STX1A	chr7	73694210	73724669
STX1B_chr16_30984256_31015638	0/0	t0001	3798	82	6	21	48	3	4	copy fasta	STX1B	chr16	30984256	31015638
STX1B_chr16_30984256_31015638	0/0	t0002	3820	48	4	5	19	1	19	copy fasta	STX1B	chr16	30984256	31015638
STX1B_chr16_30984256_31015638	0/0	t0003	3821	20	12	1	3	1	3	copy fasta	STX1B	chr16	30984256	31015638
STX1B_chr16_30984256_31015638	0/0	t0004	3822	18	1	13	0	3	1	copy fasta	STX1B	chr16	30984256	31015638
STX1B_chr16_30984256_31015638	0/0	t0005	3803	11	2	5	0	1	3	copy fasta	STX1B	chr16	30984256	31015638
STX1B_chr16_30984256_31015638	0/0	t0006	3822	8	8	0	0	0	0	copy fasta	STX1B	chr16	30984256	31015638
STX1B_chr16_30984256_31015638	0/0	t0007	3799	7	2	3	2	0	0	copy fasta	STX1B	chr16	30984256	31015638
STX1B_chr16_30984256_31015638	0/0	t0008	3796	6	6	0	0	0	0	copy fasta	STX1B	chr16	30984256	31015638
STX1B_chr16_30984256_31015638	1/0	t0009	3808	5	4	0	0	0	0	copy fasta	STX1B	chr16	30984256	31015638
STX1B_chr16_30984256_31015638	0/0	t0010	3821	5	1	1	3	0	0	copy fasta	STX1B	chr16	30984256	31015638
STX1B_chr16_30984256_31015638	0/0	t0011	3801	5	0	2	0	2	1	copy fasta	STX1B	chr16	30984256	31015638
STX1B_chr16_30984256_31015638	0/0	t0012	3822	4	4	0	0	0	0	copy fasta	STX1B	chr16	30984256	31015638
STX1B_chr16_30984256_31015638	0/0	t0013	3821	4	4	0	0	0	0	copy fasta	STX1B	chr16	30984256	31015638
STX1B_chr16_30984256_31015638	0/0	t0014	3822	4	4	0	0	0	0	copy fasta	STX1B	chr16	30984256	31015638
STX1B_chr16_30984256_31015638	0/0	t0015	3823	3	3	0	0	0	0	copy fasta	STX1B	chr16	30984256	31015638
STX1B_chr16_30984256_31015638	0/0	t0016	3823	3	3	0	0	0	0	copy fasta	STX1B	chr16	30984256	31015638
STX1B_chr16_30984256_31015638	0/0	t0017	3796	3	0	1	1	1	0	copy fasta	STX1B	chr16	30984256	31015638
STX1B_chr16_30984256_31015638	0/0	t0018	3803	2	0	2	0	0	0	copy fasta	STX1B	chr16	30984256	31015638
STX1B_chr16_30984256_31015638	0/0	t0019	3821	2	2	0	0	0	0	copy fasta	STX1B	chr16	30984256	31015638
STX1B_chr16_30984256_31015638	0/0	t0020	3798	2	0	0	0	0	2	copy fasta	STX1B	chr16	30984256	31015638
STX1B_chr16_30984256_31015638	0/0	t0021	3820	2	0	1	0	0	1	copy fasta	STX1B	chr16	30984256	31015638
STX1B_chr16_30984256_31015638	0/0	t0022	3820	2	2	0	0	0	0	copy fasta	STX1B	chr16	30984256	31015638
STX1B_chr16_30984256_31015638	0/0	t0023	3798	2	0	0	2	0	0	copy fasta	STX1B	chr16	30984256	31015638
STX1B_chr16_30984256_31015638	0/0	t0024	3800	2	0	2	0	0	0	copy fasta	STX1B	chr16	30984256	31015638
STX1B_chr16_30984256_31015638	0/0	t0025	3821	2	2	0	0	0	0	copy fasta	STX1B	chr16	30984256	31015638
STX1B_chr16_30984256_31015638	0/0	t0026	3821	1	1	0	0	0	0	copy fasta	STX1B	chr16	30984256	31015638
STX1B_chr16_30984256_31015638	0/0	t0027	3823	1	0	1	0	0	0	copy fasta	STX1B	chr16	30984256	31015638
STX1B_chr16_30984256_31015638	0/0	t0028	3823	1	1	0	0	0	0	copy fasta	STX1B	chr16	30984256	31015638
STX1B_chr16_30984256_31015638	0/0	t0029	3822	1	1	0	0	0	0	copy fasta	STX1B	chr16	30984256	31015638
STX1B_chr16_30984256_31015638	0/0	t0030	3822	1	1	0	0	0	0	copy fasta	STX1B	chr16	30984256	31015638
STX1B_chr16_30984256_31015638	0/0	t0031	3822	1	1	0	0	0	0	copy fasta	STX1B	chr16	30984256	31015638
STX1B_chr16_30984256_31015638	0/0	t0032	3822	1	1	0	0	0	0	copy fasta	STX1B	chr16	30984256	31015638
STX1B_chr16_30984256_31015638	0/0	t0033	3821	1	1	0	0	0	0	copy fasta	STX1B	chr16	30984256	31015638
STX1B_chr16_30984256_31015638	0/0	t0034	3820	1	0	0	0	0	1	copy fasta	STX1B	chr16	30984256	31015638
STX1B_chr16_30984256_31015638	0/0	t0035	3820	1	1	0	0	0	0	copy fasta	STX1B	chr16	30984256	31015638
STX1B_chr16_30984256_31015638	0/0	t0036	3820	1	0	1	0	0	0	copy fasta	STX1B	chr16	30984256	31015638
STX1B_chr16_30984256_31015638	0/0	t0037	3820	1	0	0	0	0	1	copy fasta	STX1B	chr16	30984256	31015638
STX1B_chr16_30984256_31015638	0/0	t0038	3822	1	0	1	0	0	0	copy fasta	STX1B	chr16	30984256	31015638
STX1B_chr16_30984256_31015638	0/0	t0039	3808	1	1	0	0	0	0	copy fasta	STX1B	chr16	30984256	31015638
STX1B_chr16_30984256_31015638	0/0	t0040	3808	1	1	0	0	0	0	copy fasta	STX1B	chr16	30984256	31015638
STX1B_chr16_30984256_31015638	0/0	t0041	3799	1	0	0	0	1	0	copy fasta	STX1B	chr16	30984256	31015638
STX1B_chr16_30984256_31015638	0/1	t0042	3803	1	0	0	0	0	0	copy fasta	STX1B	chr16	30984256	31015638
STX1B_chr16_30984256_31015638	0/0	t0043	3803	1	0	1	0	0	0	copy fasta	STX1B	chr16	30984256	31015638
STX1B_chr16_30984256_31015638	0/0	t0044	3819	1	1	0	0	0	0	copy fasta	STX1B	chr16	30984256	31015638