JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
STX1B_chr16_30984256_31015638	0/0	t0045	3823	1	1	0	0	0	0	copy fasta	STX1B	chr16	30984256	31015638
STX1B_chr16_30984256_31015638	0/0	t0046	3797	1	1	0	0	0	0	copy fasta	STX1B	chr16	30984256	31015638
STX1B_chr16_30984256_31015638	0/0	t0047	3825	1	0	0	1	0	0	copy fasta	STX1B	chr16	30984256	31015638
STX1B_chr16_30984256_31015638	0/0	t0048	3801	1	0	0	0	1	0	copy fasta	STX1B	chr16	30984256	31015638
STX1B_chr16_30984256_31015638	0/0	t0049	3801	1	0	1	0	0	0	copy fasta	STX1B	chr16	30984256	31015638
STX1B_chr16_30984256_31015638	0/0	t0050	3819	1	1	0	0	0	0	copy fasta	STX1B	chr16	30984256	31015638
STX1B_chr16_30984256_31015638	0/0	t0051	3798	1	1	0	0	0	0	copy fasta	STX1B	chr16	30984256	31015638
STX1B_chr16_30984256_31015638	0/0	t0052	3820	1	1	0	0	0	0	copy fasta	STX1B	chr16	30984256	31015638
STX1B_chr16_30984256_31015638	0/0	t0053	3798	1	0	1	0	0	0	copy fasta	STX1B	chr16	30984256	31015638
STX1B_chr16_30984256_31015638	0/0	t0054	3799	1	0	0	1	0	0	copy fasta	STX1B	chr16	30984256	31015638
STX1B_chr16_30984256_31015638	0/0	t0055	3796	1	0	1	0	0	0	copy fasta	STX1B	chr16	30984256	31015638
STX2_chr12_130784600_130844250	0/0	t0001	2575	187	12	36	100	9	30	copy fasta	STX2	chr12	130784600	130844250
STX2_chr12_130784600_130844250	0/1	t0002	2575	91	33	22	21	3	11	copy fasta	STX2	chr12	130784600	130844250
STX2_chr12_130784600_130844250	0/0	t0003	2574	24	16	0	6	0	2	copy fasta	STX2	chr12	130784600	130844250
STX2_chr12_130784600_130844250	0/0	t0004	2574	6	2	3	0	1	0	copy fasta	STX2	chr12	130784600	130844250
STX2_chr12_130784600_130844250	0/0	t0005	2572	5	0	0	5	0	0	copy fasta	STX2	chr12	130784600	130844250
STX2_chr12_130784600_130844250	0/0	t0006	2576	5	0	1	4	0	0	copy fasta	STX2	chr12	130784600	130844250
STX2_chr12_130784600_130844250	1/0	t0007	2575	4	3	0	0	0	0	copy fasta	STX2	chr12	130784600	130844250
STX2_chr12_130784600_130844250	0/0	t0008	2575	4	4	0	0	0	0	copy fasta	STX2	chr12	130784600	130844250
STX2_chr12_130784600_130844250	0/0	t0009	2575	4	1	2	0	0	1	copy fasta	STX2	chr12	130784600	130844250
STX2_chr12_130784600_130844250	0/0	t0010	2575	4	4	0	0	0	0	copy fasta	STX2	chr12	130784600	130844250
STX2_chr12_130784600_130844250	0/0	t0011	2575	4	0	1	3	0	0	copy fasta	STX2	chr12	130784600	130844250
STX2_chr12_130784600_130844250	0/0	t0012	2574	3	0	0	3	0	0	copy fasta	STX2	chr12	130784600	130844250
STX2_chr12_130784600_130844250	0/0	t0013	2575	3	3	0	0	0	0	copy fasta	STX2	chr12	130784600	130844250
STX2_chr12_130784600_130844250	0/0	t0014	2571	3	0	3	0	0	0	copy fasta	STX2	chr12	130784600	130844250
STX2_chr12_130784600_130844250	0/0	t0015	2574	3	0	1	0	1	1	copy fasta	STX2	chr12	130784600	130844250
STX2_chr12_130784600_130844250	0/0	t0016	2575	3	0	0	3	0	0	copy fasta	STX2	chr12	130784600	130844250
STX2_chr12_130784600_130844250	0/0	t0017	2575	2	0	0	2	0	0	copy fasta	STX2	chr12	130784600	130844250
STX2_chr12_130784600_130844250	0/0	t0018	2576	2	0	1	0	0	1	copy fasta	STX2	chr12	130784600	130844250
STX2_chr12_130784600_130844250	0/0	t0019	2575	2	2	0	0	0	0	copy fasta	STX2	chr12	130784600	130844250
STX2_chr12_130784600_130844250	0/0	t0020	2575	1	0	1	0	0	0	copy fasta	STX2	chr12	130784600	130844250
STX2_chr12_130784600_130844250	0/0	t0021	2576	1	1	0	0	0	0	copy fasta	STX2	chr12	130784600	130844250
STX2_chr12_130784600_130844250	0/0	t0022	2575	1	1	0	0	0	0	copy fasta	STX2	chr12	130784600	130844250
STX2_chr12_130784600_130844250	0/0	t0023	2575	1	1	0	0	0	0	copy fasta	STX2	chr12	130784600	130844250
STX2_chr12_130784600_130844250	0/0	t0024	2575	1	0	0	0	0	1	copy fasta	STX2	chr12	130784600	130844250
STX2_chr12_130784600_130844250	0/0	t0025	2575	1	1	0	0	0	0	copy fasta	STX2	chr12	130784600	130844250
STX2_chr12_130784600_130844250	0/0	t0026	2575	1	0	0	1	0	0	copy fasta	STX2	chr12	130784600	130844250
STX2_chr12_130784600_130844250	0/0	t0027	2575	1	0	1	0	0	0	copy fasta	STX2	chr12	130784600	130844250
STX2_chr12_130784600_130844250	0/0	t0028	2575	1	1	0	0	0	0	copy fasta	STX2	chr12	130784600	130844250
STX2_chr12_130784600_130844250	0/0	t0029	2575	1	1	0	0	0	0	copy fasta	STX2	chr12	130784600	130844250
STX2_chr12_130784600_130844250	0/0	t0030	2575	1	1	0	0	0	0	copy fasta	STX2	chr12	130784600	130844250
STX2_chr12_130784600_130844250	0/0	t0031	2575	1	0	0	1	0	0	copy fasta	STX2	chr12	130784600	130844250
STX2_chr12_130784600_130844250	0/0	t0032	2575	1	0	0	1	0	0	copy fasta	STX2	chr12	130784600	130844250
STX2_chr12_130784600_130844250	0/0	t0033	2575	1	1	0	0	0	0	copy fasta	STX2	chr12	130784600	130844250
STX2_chr12_130784600_130844250	0/0	t0034	2575	1	0	0	0	0	1	copy fasta	STX2	chr12	130784600	130844250
STX2_chr12_130784600_130844250	0/0	t0035	2574	1	1	0	0	0	0	copy fasta	STX2	chr12	130784600	130844250
STX2_chr12_130784600_130844250	0/0	t0036	2574	1	1	0	0	0	0	copy fasta	STX2	chr12	130784600	130844250
STX2_chr12_130784600_130844250	0/0	t0037	2575	1	1	0	0	0	0	copy fasta	STX2	chr12	130784600	130844250
STX2_chr12_130784600_130844250	0/0	t0038	2575	1	1	0	0	0	0	copy fasta	STX2	chr12	130784600	130844250
STX2_chr12_130784600_130844250	0/0	t0039	2575	1	1	0	0	0	0	copy fasta	STX2	chr12	130784600	130844250